Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_F12
(505 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC800.06 |brx1||ribosome biogenesis protein Brx1|Schizosacchar... 28 0.92
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos... 27 1.6
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 27 1.6
SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual 25 4.9
SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces pombe... 25 6.5
SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone oxidase|Schizosacch... 25 8.5
SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit Cdc22|... 25 8.5
SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit ... 25 8.5
SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase s... 25 8.5
SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyce... 25 8.5
>SPBC800.06 |brx1||ribosome biogenesis protein
Brx1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 295
Score = 27.9 bits (59), Expect = 0.92
Identities = 21/69 (30%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
Frame = +1
Query: 70 IVECGHTFVGTSVNRPLVYHHDVQY-SSKMFRKRVENLHFSLPHVPSIFGRSIQG---IL 237
+ C + F S R +Y H + + + VENLH ++ + ++ G +++G IL
Sbjct: 92 LYNCNNIFFFESRRREDLYLHIARAPNGPTVKFHVENLH-TMDEL-NMTGNALKGSRPIL 149
Query: 238 AFDKTYSTA 264
+FDKT+ TA
Sbjct: 150 SFDKTFDTA 158
>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 721
Score = 27.1 bits (57), Expect = 1.6
Identities = 18/65 (27%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Frame = +1
Query: 94 VGTSVNRPLVYHHDVQYSSKMFRKRVENLH-FSLPHVPSIFGRSIQGILAFDKTYSTASA 270
V ++N VY H+ SSK F+K ++ LH F + R G+ ++ ++ T A
Sbjct: 336 VNAAMNTVCVYFHEGP-SSKAFQKHIQRLHDFMWVQPEGMLMRGTNGLQVWETSF-TLQA 393
Query: 271 NITQG 285
+ G
Sbjct: 394 LVESG 398
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 27.1 bits (57), Expect = 1.6
Identities = 9/26 (34%), Positives = 14/26 (53%)
Frame = -2
Query: 213 EYGRYMRQAEMEVFNSLTEHFRAVLH 136
E G Y+ + +N + E FR +LH
Sbjct: 260 EIGAYLAEVSTRAYNGVFERFRTILH 285
>SPAC1B1.04c |||poly|Schizosaccharomyces pombe|chr 1|||Manual
Length = 604
Score = 25.4 bits (53), Expect = 4.9
Identities = 9/22 (40%), Positives = 16/22 (72%)
Frame = +1
Query: 130 HDVQYSSKMFRKRVENLHFSLP 195
+D+ ++S +FRKR + +FS P
Sbjct: 309 YDLFFASPVFRKRTSSFYFSQP 330
>SPBC800.03 |clr3||histone deacetylase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 687
Score = 25.0 bits (52), Expect = 6.5
Identities = 9/28 (32%), Positives = 16/28 (57%)
Frame = -2
Query: 210 YGRYMRQAEMEVFNSLTEHFRAVLHVMV 127
YGR M+ E + + +H+RAV ++
Sbjct: 649 YGRLMQSEHTETSDMMEQHYRAVTQYLL 676
>SPAPB1A10.12c |alo1||D-arabinono-1,4-lactone
oxidase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 461
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/24 (45%), Positives = 17/24 (70%)
Frame = +1
Query: 169 VENLHFSLPHVPSIFGRSIQGILA 240
++NL +SLP V SI S+ GI++
Sbjct: 107 LQNLGYSLPIVGSISETSVSGIMS 130
>SPAC1F7.05 |cdc22||ribonucleoside reductase large subunit
Cdc22|Schizosaccharomyces pombe|chr 1|||Manual
Length = 811
Score = 24.6 bits (51), Expect = 8.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +1
Query: 220 SIQGILAFDKTYSTASANITQGGIGYNFVNLR 315
SI+GI +D A + T GGIG N N+R
Sbjct: 227 SIEGI--YDTLKMCAMISKTAGGIGINIHNIR 256
>SPCC16C4.14c |sfc4||transcription factor TFIIIC complex subunit
Sfc4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1006
Score = 24.6 bits (51), Expect = 8.5
Identities = 9/29 (31%), Positives = 14/29 (48%)
Frame = -1
Query: 106 RWCRRKCDRIPRSPQRRVATQRFATSSWQ 20
RWC C R PQ + R+ +++Q
Sbjct: 743 RWCMLACSMYARDPQGALTPLRWVFTTFQ 771
>SPBPJ4664.01 |dps1|SPBPJ694.01|decaprenyl diphosphate synthase
subunit Dps1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 378
Score = 24.6 bits (51), Expect = 8.5
Identities = 11/32 (34%), Positives = 17/32 (53%)
Frame = -2
Query: 156 HFRAVLHVMVVDQGPIDAGADESVTAFHDHRS 61
H ++LH V+D + G+ S AF + RS
Sbjct: 130 HIASLLHDDVIDHANVRRGSPSSNVAFGNRRS 161
>SPAC12G12.15 |sif3||Sad1 interacting factor 3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 510
Score = 24.6 bits (51), Expect = 8.5
Identities = 8/31 (25%), Positives = 21/31 (67%)
Frame = +1
Query: 130 HDVQYSSKMFRKRVENLHFSLPHVPSIFGRS 222
H +++ K+ K+ + + +++ H+P ++GRS
Sbjct: 161 HFLKHYHKVRAKKYDEVLYAVYHLPLVYGRS 191
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,709,992
Number of Sequences: 5004
Number of extensions: 33351
Number of successful extensions: 92
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 91
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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