Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F10
         (543 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    26   0.22 
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    26   0.22 
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    26   0.22 
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    26   0.22 
AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.    22   4.6  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.1  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.1  

>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 418 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 308
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 363 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 398


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 418 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 308
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 332 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 367


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 418 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 308
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 383 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 418


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 26.2 bits (55), Expect = 0.22
 Identities = 11/37 (29%), Positives = 23/37 (62%)
 Frame = -3

Query: 418 INVWKKLPIGNLPYINLLYVVCLSFIGTPNPTNNMKF 308
           +NVW  + +  + Y +LL  VC++++G   P +N+ +
Sbjct: 332 MNVWDGVCMCFI-YASLLEFVCVNYVGRKRPMHNVVY 367


>AB022907-1|BAA86908.1|  615|Apis mellifera glucose oxidase protein.
          Length = 615

 Score = 21.8 bits (44), Expect = 4.6
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = -2

Query: 485 VINEKYKRAHSKTYPYLNYNVL 420
           VI E  +R HS   P L+Y+ +
Sbjct: 51  VIGEPCQRVHSSRIPDLSYDFI 72


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 479 NEKYKRAHSKTYPYLNYNV 423
           N  YK+ +   Y  L YN+
Sbjct: 93  NNNYKKLYCNNYKKLYYNI 111


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.1
 Identities = 7/19 (36%), Positives = 10/19 (52%)
 Frame = -2

Query: 479 NEKYKRAHSKTYPYLNYNV 423
           N  YK+ +   Y  L YN+
Sbjct: 93  NNNYKKLYCNNYKKLYYNI 111


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 150,031
Number of Sequences: 438
Number of extensions: 3517
Number of successful extensions: 9
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 9
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 15459066
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)