Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F07
         (762 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    23   3.1  
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    23   4.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    22   5.4  
EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.          21   9.4  
EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.      21   9.4  
DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride...    21   9.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   9.4  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 23.0 bits (47), Expect = 3.1
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = +2

Query: 149 KASKLYNNRLNNMSRLIR 202
           +A +LY++ L+N +RLIR
Sbjct: 20  EAKRLYDDLLSNYNRLIR 37


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/17 (52%), Positives = 14/17 (82%)
 Frame = +2

Query: 152 ASKLYNNRLNNMSRLIR 202
           A +LY++ L+N +RLIR
Sbjct: 21  AKRLYDDLLSNYNRLIR 37


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 152 ASKLYNNRLNNMSRLIRIFISLLCVIKTATGL 247
           A +LY++ L+N ++L+R  ++   V++    L
Sbjct: 29  AKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKL 60


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/32 (28%), Positives = 20/32 (62%)
 Frame = +2

Query: 152 ASKLYNNRLNNMSRLIRIFISLLCVIKTATGL 247
           A +LY++ L+N ++L+R  ++   V++    L
Sbjct: 29  AKRLYDDLLSNYNKLVRPVVNTSDVLRVCIKL 60


>EF625897-1|ABR45904.1|  684|Apis mellifera hexamerin protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 721 PISFDKFNFNFSSPNIRFFFIIV 653
           P+    ++FN+  PN+ F  I++
Sbjct: 650 PLDKPLYDFNYEGPNMLFKDILI 672


>EF591128-1|ABQ59246.1|  684|Apis mellifera hexamerin 70a protein.
          Length = 684

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/23 (30%), Positives = 14/23 (60%)
 Frame = -3

Query: 721 PISFDKFNFNFSSPNIRFFFIIV 653
           P+    ++FN+  PN+ F  I++
Sbjct: 650 PLDKPLYDFNYEGPNMLFKDILI 672


>DQ667192-1|ABG75744.1|  489|Apis mellifera pH-sensitive chloride
           channel variant 4 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 545 RRHQILSCLGN*N 507
           RRH ILSC G  N
Sbjct: 179 RRHLILSCQGRLN 191


>DQ667191-1|ABG75743.1|  475|Apis mellifera pH-sensitive chloride
           channel variant 3 protein.
          Length = 475

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 545 RRHQILSCLGN*N 507
           RRH ILSC G  N
Sbjct: 179 RRHLILSCQGRLN 191


>DQ667190-1|ABG75742.1|  509|Apis mellifera pH-sensitive chloride
           channel variant 1 protein.
          Length = 509

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 545 RRHQILSCLGN*N 507
           RRH ILSC G  N
Sbjct: 230 RRHLILSCQGRLN 242


>DQ667189-1|ABG75741.1|  458|Apis mellifera pH-sensitive chloride
           channel protein.
          Length = 458

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 9/13 (69%), Positives = 9/13 (69%)
 Frame = -2

Query: 545 RRHQILSCLGN*N 507
           RRH ILSC G  N
Sbjct: 179 RRHLILSCQGRLN 191


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 7/22 (31%), Positives = 17/22 (77%)
 Frame = +2

Query: 152 ASKLYNNRLNNMSRLIRIFISL 217
           A +LY++ L+N ++L+R  +++
Sbjct: 25  AKRLYDDLLSNYNKLVRPVVNV 46


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 200,323
Number of Sequences: 438
Number of extensions: 4301
Number of successful extensions: 15
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 23789892
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)