Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F05
         (685 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr 1|...    29   0.47 
SPCC74.02c |||mRNA cleavage and polyadenylation specificity fact...    29   0.83 
SPAC20G8.04c |||mitochondrial electron transfer flavoprotein-ubi...    28   1.1  
SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase comple...    28   1.4  
SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyc...    27   2.5  
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr...    26   4.4  
SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|ch...    25   7.7  

>SPAC824.04 |||WD repeat protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 341

 Score = 29.5 bits (63), Expect = 0.47
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 221 FSTFPSDDELYCARFTITPLTPD 153
           FSTF  DD  Y +RF+  P+ P+
Sbjct: 187 FSTFTIDDSRYLSRFSFPPMMPE 209


>SPCC74.02c |||mRNA cleavage and polyadenylation specificity factor
           complex associated protein|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 710

 Score = 28.7 bits (61), Expect = 0.83
 Identities = 15/49 (30%), Positives = 26/49 (53%)
 Frame = -3

Query: 164 LTPDARTRDETENIFAKDIFSLN*VVSLELTEFINTSRRPT*VGTLGTD 18
           LTP+A +  E E   +KDI + N ++ L +    + SR P  +  + +D
Sbjct: 597 LTPEATSEIEREKNESKDISTFNIILDLPVIREFDDSRPPAHIKLVSSD 645


>SPAC20G8.04c |||mitochondrial electron transfer
           flavoprotein-ubiquinone
           oxidoreductase|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 632

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +1

Query: 445 RRYPSGEERCIACKLCEAICPAQAITIEAXERKDGSRRT 561
           +R+    + C+ CK C+   P Q I  +  +  DG + T
Sbjct: 592 KRFVINSQNCVHCKTCDIKDPLQGIQWKTPQGGDGPKYT 630


>SPBC12C2.10c |pst1|SPBC21D10.01c|Clr6 histone deacetylase complex
           subunit Pst1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1522

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 10/18 (55%), Positives = 11/18 (61%)
 Frame = -2

Query: 555 PRTVLTLXCFNRDSLCWT 502
           P+  L L C  RD LCWT
Sbjct: 604 PKIELLLPCSGRDDLCWT 621


>SPBC336.03 |efc25||exchange factor Cdc25p-like|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 987

 Score = 27.1 bits (57), Expect = 2.5
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 379 ATINYPFEKGPLSPRFRGEHALRRYPS 459
           +T  +P+ KG    RF   H+L R PS
Sbjct: 85  STSPFPYLKGSFDDRFSSTHSLTRQPS 111


>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 593

 Score = 26.2 bits (55), Expect = 4.4
 Identities = 15/42 (35%), Positives = 17/42 (40%)
 Frame = +1

Query: 463 EERCIACKLCEAICPAQAITIEAXERKDGSRRTTRYDIDMTK 588
           E  CI C +C   CP  AI I        S  T RY  +  K
Sbjct: 52  ETLCIGCGICVKKCPFGAINIINLPTNLESEVTHRYSANSFK 93


>SPBC354.09c |||Tre1 family protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 794

 Score = 25.4 bits (53), Expect = 7.7
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = -3

Query: 167 PLTPDARTRDETENIFAKDIFSLN*VVSLELT 72
           PLTP     +ET  I  KD   L  +VS+ +T
Sbjct: 336 PLTPGWSAHEETNRISPKDANVLPSIVSIPIT 367


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,733,327
Number of Sequences: 5004
Number of extensions: 54199
Number of successful extensions: 118
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 115
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 118
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 315915086
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)