Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_F05
(685 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_06_0128 - 31879286-31879381,31879463-31879574,31879680-318797... 210 6e-55
03_06_0371 + 33435936-33436472,33436554-33436741,33437146-334372... 31 0.85
02_02_0464 - 10552347-10552466,10552683-10552928,10553866-105541... 31 1.1
05_01_0418 - 3288844-3288990,3289256-3289332,3289578-3289653,329... 30 2.0
02_01_0336 + 2397648-2397812,2398367-2398441,2398860-2398975,239... 28 6.0
11_02_0137 - 8702661-8703495,8703820-8704628 28 7.9
09_06_0101 - 20864151-20864464,20864616-20864805,20865149-208653... 28 7.9
>03_06_0128 -
31879286-31879381,31879463-31879574,31879680-31879747,
31880959-31881072,31881207-31881247,31881340-31881393,
31881785-31881866,31882063-31882116
Length = 206
Score = 210 bits (514), Expect = 6e-55
Identities = 93/100 (93%), Positives = 96/100 (96%)
Frame = +1
Query: 385 INYPFEKGPLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAXERKDGSRRTT 564
INYPFEKGPLSPRFRGEHALRRYP+GEERCIACKLCEAICPAQAITIEA ER+DGSRRTT
Sbjct: 78 INYPFEKGPLSPRFRGEHALRRYPTGEERCIACKLCEAICPAQAITIEAEEREDGSRRTT 137
Query: 565 RYDIDMTKCIYCGFCQEXXPVDAIVEGPNFXFSTETHEEL 684
RYDIDMTKCIYCGFCQE PVDAIVEGPNF F+TETHEEL
Sbjct: 138 RYDIDMTKCIYCGFCQEACPVDAIVEGPNFEFATETHEEL 177
>03_06_0371 +
33435936-33436472,33436554-33436741,33437146-33437245,
33437360-33437545,33438977-33439186,33439772-33439959,
33440083-33440341
Length = 555
Score = 31.1 bits (67), Expect = 0.85
Identities = 19/71 (26%), Positives = 36/71 (50%), Gaps = 1/71 (1%)
Frame = +1
Query: 184 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQTMFWT-ELARGFAVTLA 360
A Y S + N+ YP++ P YK + ++ F + D + T+F +L G+ V +
Sbjct: 189 ASYPSVVQNNILWFYPRSEPEYKEILQRKRPPYFPDLDDPSFNTVFGVRDLFYGYDVLVE 248
Query: 361 HIFXEPATINY 393
++ +PA + Y
Sbjct: 249 NLM-DPAHVPY 258
>02_02_0464 -
10552347-10552466,10552683-10552928,10553866-10554135,
10554231-10554413,10554493-10554688,10554775-10555079,
10555515-10555604,10555689-10555806,10555991-10556088,
10556187-10556272,10557622-10557736
Length = 608
Score = 30.7 bits (66), Expect = 1.1
Identities = 21/61 (34%), Positives = 25/61 (40%), Gaps = 3/61 (4%)
Frame = +1
Query: 463 EERCIACKL---CEAICPAQAITIEAXERKDGSRRTTRYDIDMTKCIYCGFCQEXXPVDA 633
E+RC K C CP A + E SR + I CI CG C + P DA
Sbjct: 17 EDRCRPSKCGQQCRKRCPVNATGRQCIEVTPSSRVSL---ISEELCIGCGICVKVCPFDA 73
Query: 634 I 636
I
Sbjct: 74 I 74
Score = 29.9 bits (64), Expect = 2.0
Identities = 11/21 (52%), Positives = 13/21 (61%)
Frame = +1
Query: 463 EERCIACKLCEAICPAQAITI 525
EE CI C +C +CP AI I
Sbjct: 56 EELCIGCGICVKVCPFDAIQI 76
>05_01_0418 -
3288844-3288990,3289256-3289332,3289578-3289653,
3290125-3290220,3290307-3290376,3290474-3290564,
3290753-3290822,3290908-3291044,3291313-3291465,
3291816-3291864,3292205-3292366
Length = 375
Score = 29.9 bits (64), Expect = 2.0
Identities = 18/57 (31%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Frame = +1
Query: 484 KLCEAICPAQAITI------EAXERKDGSRRTTRYDIDMTKCIYCGFCQEXXPVDAI 636
K CE +CPA AI + E + D S + +C CG C P D I
Sbjct: 134 KPCEKVCPADAILLERVMIEEEHSQSDPSCGKLEGGVITERCYGCGRCLSVCPYDRI 190
>02_01_0336 +
2397648-2397812,2398367-2398441,2398860-2398975,
2399155-2399269,2399360-2399488,2399809-2399856,
2400369-2400448,2400628-2400824,2400916-2401202,
2401281-2401307,2401353-2401538,2401633-2402094,
2402201-2402350,2402612-2402687,2402851-2402978,
2403244-2403435,2403559-2403690,2403767-2403889,
2404128-2404346,2404518-2404679
Length = 1022
Score = 28.3 bits (60), Expect = 6.0
Identities = 14/47 (29%), Positives = 25/47 (53%)
Frame = +1
Query: 184 AQYSSSSEGNVEKVYPQNIPGYKYVNAEEQDMSFRAMSDRAAQTMFW 324
+Q + + N+E++ P+ + V AEE+D RA + +A M W
Sbjct: 156 SQVDGTYQFNLEELVPKLCELAQIVKAEEKDNMLRASTLQALSAMIW 202
>11_02_0137 - 8702661-8703495,8703820-8704628
Length = 547
Score = 27.9 bits (59), Expect = 7.9
Identities = 9/18 (50%), Positives = 13/18 (72%)
Frame = -2
Query: 282 RHVLFLCIYIFISRYVLW 229
RH+L LCI +F++ Y W
Sbjct: 120 RHLLNLCIQVFLALYAFW 137
>09_06_0101 -
20864151-20864464,20864616-20864805,20865149-20865310,
20866073-20866186
Length = 259
Score = 27.9 bits (59), Expect = 7.9
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 3/101 (2%)
Frame = -3
Query: 317 IV*AALSDIALKDMSCSSAFTYLYPGMFCG*TFS--TFPSDDELYCARFTITPLTPDART 144
+V A+ + IA KD T+++PG +C T + P D + F + T T
Sbjct: 16 LVAASPAAIAAKDDKIFYQITFMWPGAYCAQTKAGCCMPKTDVAPASDFYVAGFTVYNAT 75
Query: 143 RDETENIFAKDIFSLN*VVSL-ELTEFINTSRRPT*VGTLG 24
+ + + + F +N + + L ++ N R P+ G G
Sbjct: 76 TNSSLSSCSNTPFDMNQIGDVTRLMQYWNNIRCPSKSGQKG 116
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,510,201
Number of Sequences: 37544
Number of extensions: 344191
Number of successful extensions: 714
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 713
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1733104716
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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