Bombyx BLAST Result against mosquito

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F05
         (685 letters)

Database: mosquito 
           2352 sequences; 563,979 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.    28   0.32 
AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.            27   0.73 
M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles ...    23   9.0  

>AJ535207-1|CAD59407.1| 1036|Anopheles gambiae SMC5 protein protein.
          Length = 1036

 Score = 27.9 bits (59), Expect = 0.32
 Identities = 17/39 (43%), Positives = 23/39 (58%)
 Frame = +2

Query: 185 HSTAHHQKEMLRRFTHRTYLDINM*MQRNKTCLSGLCQI 301
           H TA H    L+RF   TYL I+M +Q     L+GLC++
Sbjct: 511 HYTARHPIGSLKRFGFHTYL-IDM-VQGPYPVLNGLCKL 547


>AF444780-1|AAL37901.1| 1152|Anopheles gambiae Toll protein.
          Length = 1152

 Score = 26.6 bits (56), Expect = 0.73
 Identities = 15/40 (37%), Positives = 18/40 (45%)
 Frame = -3

Query: 242  GMFCG*TFSTFPSDDELYCARFTITPLTPDARTRDETENI 123
            G+F        P DD L   +  +TP TP A T   TE I
Sbjct: 1057 GLFMKQLQGAAPVDDRLELIKPQVTPATPPALTTPPTEPI 1096


>M93689-1|AAA29368.1|  442|Anopheles gambiae protein ( Anopheles
           gambiae T1 retroposon. ).
          Length = 442

 Score = 23.0 bits (47), Expect = 9.0
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 266 RNKTCLSGLCQIEQLRQCSGLS*PED 343
           R+ +C S +C +  + QCS  + P D
Sbjct: 20  RSCSCHSSVCAVSFVMQCSTCNAPTD 45


  Database: mosquito
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 563,979
  Number of sequences in database:  2352
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 710,561
Number of Sequences: 2352
Number of extensions: 14664
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 563,979
effective HSP length: 62
effective length of database: 418,155
effective search space used: 68995575
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)