Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_F05
         (685 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical pr...   239   2e-63
AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH oxidored...   239   2e-63
U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical pr...    29   3.1  
Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical pr...    28   5.4  
AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical ...    28   5.4  

>U00037-2|AAA50662.1|  212|Caenorhabditis elegans Hypothetical
           protein T20H4.5 protein.
          Length = 212

 Score =  239 bits (584), Expect = 2e-63
 Identities = 112/152 (73%), Positives = 119/152 (78%), Gaps = 1/152 (0%)
 Frame = +1

Query: 232 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFXEPATINYPFEKG 408
           Q    YK+V    E D +     +     +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 409 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAXERKDGSRRTTRYDIDMTK 588
           PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEA  R DGSRRTTRYDIDMTK
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151

Query: 589 CIYCGFCQEXXPVDAIVEGPNFXFSTETHEEL 684
           CIYCG CQE  PVDAIVEGPNF +STETHEEL
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEEL 183


>AF140272-1|AAD34863.1|  212|Caenorhabditis elegans NADH
           oxidoreductase complex I 23.8kDa subunit protein.
          Length = 212

 Score =  239 bits (584), Expect = 2e-63
 Identities = 112/152 (73%), Positives = 119/152 (78%), Gaps = 1/152 (0%)
 Frame = +1

Query: 232 QNIPGYKYVNA-EEQDMSFRAMSDRAAQTMFWTELARGFAVTLAHIFXEPATINYPFEKG 408
           Q    YK+V    E D +     +     +F+TEL RGF V L H+F EPATINYPFEKG
Sbjct: 32  QKRSNYKFVGMPNETDGTLAGDLNYGLHNVFFTELFRGFGVMLGHVFMEPATINYPFEKG 91

Query: 409 PLSPRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAXERKDGSRRTTRYDIDMTK 588
           PLS RFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEA  R DGSRRTTRYDIDMTK
Sbjct: 92  PLSSRFRGEHALRRYPSGEERCIACKLCEAICPAQAITIEAETRPDGSRRTTRYDIDMTK 151

Query: 589 CIYCGFCQEXXPVDAIVEGPNFXFSTETHEEL 684
           CIYCG CQE  PVDAIVEGPNF +STETHEEL
Sbjct: 152 CIYCGLCQEACPVDAIVEGPNFEYSTETHEEL 183


>U41278-1|AAK31511.1|  305|Caenorhabditis elegans Hypothetical
           protein F33G12.2 protein.
          Length = 305

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +1

Query: 502 CPAQAITIEAXERKDGSRRTTRYDIDMTKCIYCG 603
           CP   +   A + K G+ R  RY++D   C+ CG
Sbjct: 4   CPT--VRARAIDCKQGAVRAVRYNVDGNYCVTCG 35


>Z35598-2|CAA84651.2|  656|Caenorhabditis elegans Hypothetical
           protein F10F2.4 protein.
          Length = 656

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -2

Query: 531 CFNRDSLCWTNGFTELTS 478
           C NRDS CW++   ELTS
Sbjct: 461 CPNRDSPCWSDHLDELTS 478


>AL110487-1|CAB54424.1|  610|Caenorhabditis elegans Hypothetical
           protein Y39E4B.1 protein.
          Length = 610

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 8/86 (9%)
 Frame = +1

Query: 403 KGPLSPRFRGEHALRRYPSGEERCIA--CKL-CEAICPA-----QAITIEAXERKDGSRR 558
           KGPL      +  LR     ++RC    C L C+  CP      Q I +EA         
Sbjct: 4   KGPLIKNNETDVPLRIAIVEKDRCKPKNCGLACKRACPVNRQGKQCIVVEAT-------- 55

Query: 559 TTRYDIDMTKCIYCGFCQEXXPVDAI 636
           +T   I    CI CG C +  P DAI
Sbjct: 56  STISQISEILCIGCGICVKKCPYDAI 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,337,283
Number of Sequences: 27780
Number of extensions: 317366
Number of successful extensions: 645
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 635
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 643
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1560745544
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)