Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_E23
(698 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ... 31 0.16
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|... 31 0.21
SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr... 30 0.37
SPCC825.01 |||ribosome biogenesis ATPase, Arb family |Schizosacc... 29 0.85
SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr ... 29 0.85
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p... 28 1.5
SPAC1556.02c |sdh1||succinate dehydrogenase Sdh1|Schizosaccharom... 27 2.0
SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|ch... 26 4.5
SPCC1393.08 |||transcription factor, zf-GATA type |Schizosacchar... 26 4.5
SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharo... 26 4.5
SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr 2|... 26 4.5
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 4.5
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 26 4.5
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch... 26 6.0
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 25 7.9
SPAC1420.01c ||SPAC56E4.08c|DUF1752 family protein|Schizosacchar... 25 7.9
SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 7.9
SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16 |S... 25 7.9
>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
membrane transporter Hmt1|Schizosaccharomyces pombe|chr
3|||Manual
Length = 830
Score = 31.1 bits (67), Expect = 0.16
Identities = 19/44 (43%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
Frame = +2
Query: 191 HYQF-HDFHSPQLEDPDFDAKP--MILLVGQYSTGKTTFIRYLL 313
H F +D P L D +F A+P +I LVG+ GK+T +R LL
Sbjct: 588 HVSFAYDPRKPVLSDINFVAQPGKVIALVGESGGGKSTIMRILL 631
>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
Dna2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1398
Score = 30.7 bits (66), Expect = 0.21
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 5/45 (11%)
Frame = +2
Query: 203 HDFHSPQLEDPDFDAKPMILLVGQYSTGKTTFI-----RYLLERD 322
H H P L+ P+FD K + G Y K +FI RY +++D
Sbjct: 838 HRLHIPWLKMPNFDFKKNQVFFGNYEDSKLSFIGSNHTRYRIDKD 882
>SPBC14F5.06 |||iron-sulfur protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 593
Score = 29.9 bits (64), Expect = 0.37
Identities = 13/43 (30%), Positives = 24/43 (55%)
Frame = +2
Query: 239 FDAKPMILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRF 367
F +I+L+G+ TGKTTF +++ + I + P+ +F
Sbjct: 372 FSDAEIIVLLGENGTGKTTFCKWMAKNSDLKISMKPQTIAPKF 414
>SPCC825.01 |||ribosome biogenesis ATPase, Arb family
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 822
Score = 28.7 bits (61), Expect = 0.85
Identities = 13/29 (44%), Positives = 17/29 (58%)
Frame = +2
Query: 242 DAKPMILLVGQYSTGKTTFIRYLLERDFP 328
D K + LVG GKTT I+ +LE+ P
Sbjct: 618 DLKSRVALVGPNGAGKTTLIKLILEKVQP 646
>SPBC1709.19c |||NifU-like protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 260
Score = 28.7 bits (61), Expect = 0.85
Identities = 16/41 (39%), Positives = 21/41 (51%), Gaps = 1/41 (2%)
Frame = +2
Query: 398 VIPGNAL-VVDPKKQFRPLSKFGNAFLNRFQCSTVTSDVLR 517
V+P +L KK F P+S GN F RFQ + S +R
Sbjct: 6 VVPFQSLRTAFQKKTFLPVSSAGNVFTPRFQLQAIRSIWIR 46
>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 464
Score = 27.9 bits (59), Expect = 1.5
Identities = 18/57 (31%), Positives = 29/57 (50%)
Frame = +2
Query: 257 ILLVGQYSTGKTTFIRYLLERDFPGIRIGPEPTTDRFIAVMFDEKEGVIPGNALVVD 427
+++VG+ S GKTTF+ L+ + R P+ T D F+ +G N +VD
Sbjct: 121 LIVVGESSLGKTTFVNSFLQSNDTNFR--PKKTMD-FVEHKATLSDGDQKFNLTIVD 174
>SPAC1556.02c |sdh1||succinate dehydrogenase
Sdh1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 641
Score = 27.5 bits (58), Expect = 2.0
Identities = 14/30 (46%), Positives = 17/30 (56%)
Frame = -3
Query: 480 RFRKALPNLLNGRNCFFGSTTNALPGITPS 391
RFRK P+L NG N ST++ L I S
Sbjct: 3 RFRKVAPSLKNGGNLKLFSTSSTLKKIASS 32
>SPBC1289.03c |spi1||Ran GTPase Spi1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 216
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 257 ILLVGQYSTGKTTFIRYLLERDF 325
++LVG TGKTTF++ L +F
Sbjct: 12 LVLVGDGGTGKTTFVKRHLTGEF 34
>SPCC1393.08 |||transcription factor, zf-GATA type
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 557
Score = 26.2 bits (55), Expect = 4.5
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 176 LPLELHYQFHDFHSPQLEDPDFDAKPMILLVGQY 277
LP++LH ++P D DFD+ M+ L+ Y
Sbjct: 53 LPIDLHKDALFANAPGKGDVDFDSVSMLQLLSDY 86
>SPAC343.11c |msc1||multi-copy suppressor of Chk1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1588
Score = 26.2 bits (55), Expect = 4.5
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = -1
Query: 353 SALDQYGCPENLSLANT**MSFYRWSTVPREVSWVW 246
S L Y CP+ S Y W+T PR VW
Sbjct: 1492 STLSNYACPDCCSKEG----KLYPWNTRPRSTPSVW 1523
>SPBC12C2.08 |dnm1||dynamin Dnm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 781
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/30 (36%), Positives = 19/30 (63%)
Frame = +2
Query: 236 DFDAKPMILLVGQYSTGKTTFIRYLLERDF 325
DF P I++VG S GK++ + ++ +DF
Sbjct: 22 DFLDLPSIVVVGSQSCGKSSVLENIVGKDF 51
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 4.5
Identities = 11/20 (55%), Positives = 14/20 (70%)
Frame = +2
Query: 251 PMILLVGQYSTGKTTFIRYL 310
P+ L+VGQ +GKTT I L
Sbjct: 28 PLTLIVGQNGSGKTTIIECL 47
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 26.2 bits (55), Expect = 4.5
Identities = 24/113 (21%), Positives = 46/113 (40%), Gaps = 3/113 (2%)
Frame = -3
Query: 624 STRSANHSNTPVKSYPRSTRCFSPDRIPGVSTIEIPRSTSDVTVEHW---NRFRKALPNL 454
S + HS + K+YP +C + P +T + D E + + + K L
Sbjct: 22 SFKEEEHSGSQTKNYPVVVKCIQ-EHDPVDTTNVLVADDLDSNFEPFSITDDYGKYENTL 80
Query: 453 LNGRNCFFGSTTNALPGITPSFSSNITAINLSVVGSGPIRMPGKSLSSKYLIN 295
++ + N P + S SS+ + S + S +R+ + ++ LIN
Sbjct: 81 VSHSSTILNEPYNESPSSSSSDSSSRSTSPFSQLSSQSLRLNAEEIAPSSLIN 133
>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
2|||Manual
Length = 530
Score = 25.8 bits (54), Expect = 6.0
Identities = 19/61 (31%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Frame = -3
Query: 582 YPRSTRCFSPDRIPGVSTIEIPRS-TSDVTVE-HWNRFRKALPNLLNGRNCFFGSTTNAL 409
YPRS CF P V E+P S T +++ R L L++ + F G +T +
Sbjct: 181 YPRSMECFYPGEY--VYNFELPISCTYPESIQTDMGRVYYFLETLVDRSSTFSGKSTGRI 238
Query: 408 P 406
P
Sbjct: 239 P 239
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 25.4 bits (53), Expect = 7.9
Identities = 29/97 (29%), Positives = 42/97 (43%)
Frame = -3
Query: 396 PSFSSNITAINLSVVGSGPIRMPGKSLSSKYLINVVLPVEYCPTRSIMGLASKSGSSSCG 217
PS SS+ ++ + S+ S S SS +I+ PT + ++S S SSS
Sbjct: 241 PSTSSSSSSTSSSLSSSSSSSTASSSSSSSSIISSSSSSSSSPTSTSSTISSSSSSSSSP 300
Query: 216 EWKSWNW*CSSRGNSLVL*ILLSPSTTFSIFSAFSPS 106
S SS +S L S S + S S+FS S
Sbjct: 301 TSTSSTISSSSSSSSSFSSTLSSSSMSSS--SSFSSS 335
>SPAC1420.01c ||SPAC56E4.08c|DUF1752 family
protein|Schizosaccharomyces pombe|chr 1|||Manual
Length = 580
Score = 25.4 bits (53), Expect = 7.9
Identities = 16/45 (35%), Positives = 21/45 (46%), Gaps = 3/45 (6%)
Frame = -3
Query: 567 RCFSPDRIPGVSTIEIPRS---TSDVTVEHWNRFRKALPNLLNGR 442
R SP+ + + T I + T+D WN F K NL NGR
Sbjct: 4 RVVSPNPMLSLETENIAKMGTLTADSLGSMWNVFTKCAENLENGR 48
>SPAC22H10.09 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 646
Score = 25.4 bits (53), Expect = 7.9
Identities = 11/34 (32%), Positives = 15/34 (44%)
Frame = +2
Query: 122 ENIENVVEGLKRIYKTKLLPLELHYQFHDFHSPQ 223
+N N+VEG +Y L + HY D Q
Sbjct: 350 KNFSNIVEGSMEVYSAYLHIIRDHYNLSDLADVQ 383
>SPAC890.03 |ppk16|mug92|serine/threonine protein kinase Ppk16
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 7.9
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = -3
Query: 270 PTRSIMGLASKSGSSSCGEWKSWNW*CSSRGNSLVL*ILLSPSTT 136
P RS+ G +S + S + +S++ S+ NSL+ I PS++
Sbjct: 547 PIRSLSGRSSVASSRNSSRTRSYSNVSSASSNSLISIISSKPSSS 591
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,900,800
Number of Sequences: 5004
Number of extensions: 61306
Number of successful extensions: 218
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 205
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 218
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 323158234
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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