Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_E21
(789 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit Dim1|S... 210 1e-55
SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr 2||... 27 2.3
SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr 1|||... 27 2.3
SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces pomb... 27 4.0
SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual 26 5.4
SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1 |Schiz... 26 7.1
SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||... 26 7.1
SPBC12D12.07c |trx2||mitochondrial thioredoxin Trx2|Schizosaccha... 25 9.4
SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|c... 25 9.4
>SPCC16A11.05c |dim1||U4/U6 x U5 tri-snRNP complex subunit
Dim1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 142
Score = 210 bits (514), Expect = 1e-55
Identities = 95/120 (79%), Positives = 105/120 (87%)
Frame = +1
Query: 430 MSYMLGHLHNGWQVDQAILSEEDRVVVIRFGHDWDPTCMKMDEVLYSIAEKVKNFAVIYL 609
MSY L HLH+GW VDQAILSE++R+VVIRFG D D C+K DEVLY IAEKV N AVIYL
Sbjct: 1 MSYFLPHLHSGWHVDQAILSEQERLVVIRFGRDHDEECIKQDEVLYRIAEKVVNMAVIYL 60
Query: 610 VDITEVPDFNKMYELYDPCTVMFFFRNKHIMIDLGTGNNNKINWPLEDXQEMIDIIETVY 789
VDI EVPDFNKMYELYD T+MFF+RNKH+MIDLGTGNNNKINWPLED QEMIDIIET++
Sbjct: 61 VDIDEVPDFNKMYELYDRTTIMFFYRNKHMMIDLGTGNNNKINWPLEDKQEMIDIIETIF 120
>SPBC1348.10c |||phospholipase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 673
Score = 27.5 bits (58), Expect = 2.3
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Frame = +1
Query: 409 IK*FICKMSYMLGHLHNGWQVDQAILSEEDRVVVIR---------FGHDWDPTCMKMDEV 561
IK FI M Y+ HL +G D++ + D + F DW+ +K ++
Sbjct: 319 IKAFI-PMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN-VKKNDT 376
Query: 562 LYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-MIDLGTGNNNKIN 738
Y I + + DI P+ + Y + V F I ++D G N
Sbjct: 377 YYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDLVDGGEDRENIPL 436
Query: 739 WPLEDXQEMIDII 777
WPL Q +D++
Sbjct: 437 WPLLHPQRFVDVV 449
>SPAC977.09c |||phospholipase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 673
Score = 27.5 bits (58), Expect = 2.3
Identities = 32/133 (24%), Positives = 52/133 (39%), Gaps = 10/133 (7%)
Frame = +1
Query: 409 IK*FICKMSYMLGHLHNGWQVDQAILSEEDRVVVIR---------FGHDWDPTCMKMDEV 561
IK FI M Y+ HL +G D++ + D + F DW+ +K ++
Sbjct: 319 IKAFI-PMEYVGTHLLDGVPPDKSCIHNYDNAGFVMGTSATLFNSFLLDWNEN-VKKNDT 376
Query: 562 LYSIAEKVKNFAVIYLVDITEVPDFNKMYELYDPCTVMFFFRNKHI-MIDLGTGNNNKIN 738
Y I + + DI P+ + Y + V F I ++D G N
Sbjct: 377 YYDILHAILEDLSKHQDDIAPYPNPYQNYTTSNTSVVNAFEPYDTIDLVDGGEDRENIPL 436
Query: 739 WPLEDXQEMIDII 777
WPL Q +D++
Sbjct: 437 WPLLHPQRFVDVV 449
>SPBC30B4.05 |kap109||karyopherin Kap109|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 967
Score = 26.6 bits (56), Expect = 4.0
Identities = 11/36 (30%), Positives = 20/36 (55%)
Frame = -2
Query: 314 QILILFCSLKFAFHI*DIPKLFYSHILFLVTVHVFY 207
Q+++L C L + + DIP+ F H+ +T + Y
Sbjct: 203 QVILLECKLFYDLNCQDIPEFFEDHMSEFMTAFLNY 238
>SPBC2A9.10 |||Bin3 family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 268
Score = 26.2 bits (55), Expect = 5.4
Identities = 8/20 (40%), Positives = 15/20 (75%)
Frame = -2
Query: 665 HGSYNSYILLKSGTSVMSTK 606
HG+Y+SY ++ GTS++ +
Sbjct: 6 HGNYHSYYSMRGGTSIIDPR 25
>SPAC8F11.09c |nnt1||nicotinamide N-methyltransferase Nnt1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 7.1
Identities = 9/19 (47%), Positives = 15/19 (78%)
Frame = -1
Query: 306 DIILLTEICLSHLRHSKVI 250
DI+LL+++ +H HSK+I
Sbjct: 157 DILLLSDLVFNHTEHSKLI 175
>SPAC3G6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 125
Score = 25.8 bits (54), Expect = 7.1
Identities = 10/33 (30%), Positives = 20/33 (60%)
Frame = +1
Query: 316 SVVLQHDYILLIAIAISRKKNTEIIVCLK*YIK 414
+ + Q Y+L I I +++ TE++ LK Y++
Sbjct: 56 NTIFQFSYLLYIYIDLTKADQTEVLQFLKTYVE 88
>SPBC12D12.07c |trx2||mitochondrial thioredoxin
Trx2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 121
Score = 25.4 bits (53), Expect = 9.4
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Frame = +1
Query: 496 DRVVVIRFGHDWDPTCMKMDEVLYSIAEKVK--NFAVIYLVDITEVPDFNKMYELYDPCT 669
D+V V+ F DW C + L ++E+ + +F + +++ N +Y L P
Sbjct: 35 DKVTVVDFYADWCGPCKYLKPFLEKLSEQNQKASFIAVNADKFSDIAQKNGVYAL--PTM 92
Query: 670 VMF 678
V+F
Sbjct: 93 VLF 95
>SPAC18G6.12c |||hypothetical protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 309
Score = 25.4 bits (53), Expect = 9.4
Identities = 17/64 (26%), Positives = 27/64 (42%)
Frame = +3
Query: 318 SGPTTRLYFAHSNSNFQKKEYRNNRLFEIIHKVVYLQNELYARPSTQWLASRSGHSIRRR 497
SGP R+ F + + N+ R+N+ + K +YL + + L R S R
Sbjct: 245 SGPYRRVAFTYQDENYYYISGRSNKDIGELSKKMYLMYKQAYKDLNASLRERRRRSTSNR 304
Query: 498 PCSG 509
SG
Sbjct: 305 RNSG 308
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,317,572
Number of Sequences: 5004
Number of extensions: 72464
Number of successful extensions: 200
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 197
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 200
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 383374054
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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