Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E15
         (810 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces po...    29   0.59 
SPAC1399.05c |||transcription factor, zf-fungal binuclear cluste...    27   2.4  
SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk...    27   3.2  
SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein Phf1...    27   4.2  
SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1 |Schizosacch...    26   7.3  
SPAC23G3.07c |snf30||SWI/SNF complex subunit Snf30|Schizosacchar...    26   7.3  
SPBC428.06c |||histone deacetylase complex subunit, RXT2 family ...    26   7.3  

>SPAC17A2.12 |||ATP-dependent DNA helicase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 897

 Score = 29.5 bits (63), Expect = 0.59
 Identities = 24/82 (29%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +1

Query: 310 WNHQQPHLYNNVSQLEAEMMLNKQFALEHGIPTNSCYSVSP--HHSGVYPVHEPLYEAWR 483
           WN   P    + S  + ++ L++QFA       +S YS+ P  H     P    L  + R
Sbjct: 30  WNSSSPSSAPSSSSSQNQVELDEQFARSLQNSQSSSYSLPPFDHPPSKNPTSSSL--STR 87

Query: 484 KVWDVK-VTSTEEYPHLRPARL 546
           K W  K + S + +P   P RL
Sbjct: 88  KRWRQKRLWSFKNFPFRPPTRL 109


>SPAC1399.05c |||transcription factor, zf-fungal binuclear cluster
           type|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 529

 Score = 27.5 bits (58), Expect = 2.4
 Identities = 14/46 (30%), Positives = 25/46 (54%)
 Frame = +1

Query: 211 YSAKYYHHGTPTENLGDDALLKHREYFNWFCHMWNHQQPHLYNNVS 348
           YS  Y    +PT +L D A+ +  E+   +CH+W   +P  Y+ ++
Sbjct: 321 YSMLYRMLRSPTLDL-DYAIFQLEEWRKEWCHLWEQPEPQ-YSRIA 364


>SPAC1D4.06c |csk1||cyclin-dependent kinase activating kinase Csk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 306

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 11/26 (42%), Positives = 18/26 (69%), Gaps = 1/26 (3%)
 Frame = -1

Query: 738 IIXHVGHEHVDRIVDNSXE-ELASLY 664
           I+  +GH H++RIVD+  + E  S+Y
Sbjct: 59  ILESIGHPHIERIVDSFIDNEAGSVY 84


>SPCC4G3.07c |phf1|swp1, saf50|PHD finger containing protein
           Phf1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 461

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 11/25 (44%), Positives = 17/25 (68%)
 Frame = +1

Query: 499 KVTSTEEYPHLRPARLRRGFRHRGV 573
           ++ + EEYPHL+P+ L    R+R V
Sbjct: 416 QIATVEEYPHLQPSLLPTFQRNRKV 440


>SPCC895.09c |ucp12||ATP-dependent RNA helicase Ucp1
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1327

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/26 (30%), Positives = 16/26 (61%)
 Frame = -3

Query: 181 NAAVLPETSIVPPRLLREDGYLXHRQ 104
           N ++L   S++PP+   E+GY   ++
Sbjct: 110 NPSILDHVSLIPPKSYYENGYFPEKE 135


>SPAC23G3.07c |snf30||SWI/SNF complex subunit
           Snf30|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 274

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = +1

Query: 451 PVHEPLYEAWRKVWDVKVTSTEEYP 525
           P  EPLY+  R+ + +  TST  YP
Sbjct: 103 PQLEPLYKELRQYFQIAQTSTLSYP 127


>SPBC428.06c |||histone deacetylase complex subunit, RXT2 family
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 242

 Score = 25.8 bits (54), Expect = 7.3
 Identities = 8/10 (80%), Positives = 10/10 (100%)
 Frame = +1

Query: 781 KFLRCWTNVR 810
           +F+RCWTNVR
Sbjct: 193 EFIRCWTNVR 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,981,710
Number of Sequences: 5004
Number of extensions: 56675
Number of successful extensions: 152
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 394431430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)