Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E14
         (776 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor E|S...    29   0.98 
SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces po...    27   2.3  
SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|ch...    27   4.0  
SPBC32H8.06 |mug93||TPR repeat protein, meiotically spliced|Schi...    26   5.2  
SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomy...    25   9.2  
SPBC23E6.09 |ssn6||transcriptional corepressor Ssn6|Schizosaccha...    25   9.2  

>SPAC22H10.10 |alp21|sto1|tubulin specific chaperone cofactor
           E|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 511

 Score = 28.7 bits (61), Expect = 0.98
 Identities = 15/50 (30%), Positives = 28/50 (56%)
 Frame = -2

Query: 313 SSILLTISFLNIARDLFMEILIFWNV*RSCDKIPLRRNVNFQIQYFNNLL 164
           S IL  +  L+++R+LF E   F+ + + C ++P  RN+      F+N +
Sbjct: 137 SKILPEVIDLDLSRNLFHE---FFPILKLCSQLPSLRNLTLDSNLFSNFI 183


>SPAC1002.18 |urg3||DUF1688 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 399

 Score = 27.5 bits (58), Expect = 2.3
 Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 2/70 (2%)
 Frame = -1

Query: 443 TYARILSIHRRSILWRKEEQQSSNPYL-SVMY-ASSLSELFPNILK*YIAHDFVSKYST* 270
           T A++LS+       +K  Q++ +  L S +Y  S L E+   ++   I  DF  KYST 
Sbjct: 5   TVAKLLSLQDIRYKAQKVLQKAESQSLKSFLYDPSKLPEVADFVVS-VIQADFKGKYSTI 63

Query: 269 PVHGDFDFLE 240
           P HG +   E
Sbjct: 64  PPHGRWQHFE 73


>SPCC777.02 |||transcription factor |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 632

 Score = 26.6 bits (56), Expect = 4.0
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 473 LRC*GILYLCTYARILSIHRRSILWRKEEQQSSNPYLS 360
           + C  + +   YA+ L IHR S L+    + + N Y S
Sbjct: 175 IHCLQLFFKWQYAQFLFIHRESFLFEYFHRSNDNMYCS 212


>SPBC32H8.06 |mug93||TPR repeat protein, meiotically
           spliced|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 383

 Score = 26.2 bits (55), Expect = 5.2
 Identities = 10/39 (25%), Positives = 24/39 (61%)
 Frame = -1

Query: 509 DQTCTDLRQARRLRC*GILYLCTYARILSIHRRSILWRK 393
           D + T LR+    +   +++ CTYA +++ + + ++WR+
Sbjct: 46  DSSLTHLRKKSYTK---VVHDCTYALVINPYDKKVIWRR 81


>SPBC1E8.02 |||ubiquitin family protein, unknown|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 16/48 (33%), Positives = 24/48 (50%)
 Frame = -1

Query: 434 RILSIHRRSILWRKEEQQSSNPYLSVMYASSLSELFPNILK*YIAHDF 291
           RI S++   +  R+  Q+    Y S  + S L  LFPNI +   +H F
Sbjct: 112 RITSLNPEELSRRERAQRLLQTYNS-FHGSGLGGLFPNIHRELESHGF 158


>SPBC23E6.09 |ssn6||transcriptional corepressor
           Ssn6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1102

 Score = 25.4 bits (53), Expect = 9.2
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = -2

Query: 463 KASYISARTPVF*VSIGVVYY 401
           +A Y   R P F  SIGV+YY
Sbjct: 609 QAVYRDGRNPTFWCSIGVLYY 629


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,144,391
Number of Sequences: 5004
Number of extensions: 65317
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 161
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 375345278
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)