Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E14
         (776 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0029 + 187769-188707,188971-189246,189978-190174,190263-19...    31   1.3  
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367...    29   3.1  
01_07_0205 - 41978437-41980599,41980805-41981215                       29   3.1  
11_06_0412 - 23235670-23236512,23236804-23237838                       29   5.4  
08_01_0746 - 6959210-6959344,6959467-6959776,6960102-6960589           28   7.2  
06_01_0590 - 4240260-4240883,4241063-4242238,4242691-4242760,424...    28   7.2  

>05_01_0029 +
           187769-188707,188971-189246,189978-190174,190263-190404,
           190584-190862,190941-191013,191331-191379,192169-192433,
           192576-192631,192777-192845,193028-193139,193682-193771,
           193955-194125,194449-194506,194970-195128,195379-195401
          Length = 985

 Score = 30.7 bits (66), Expect = 1.3
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = -1

Query: 428 LSIHRRSILWRKEEQQSSNPYLSVMYASSLS 336
           + IH+R + W  EEQ+   P+    YA SLS
Sbjct: 647 VGIHQRYLQWLIEEQECDEPHYHTSYALSLS 677


>02_04_0233 -
           21135743-21135867,21135970-21136340,21136486-21136757,
           21137289-21137397,21137846-21138247,21138376-21138419,
           21138539-21138759,21140163-21140274,21140620-21140754
          Length = 596

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 13/38 (34%), Positives = 24/38 (63%)
 Frame = +3

Query: 528 HILHARRSPLSKDRMQQNRRNLSQWLQNRKHQLLISTR 641
           HIL  R + ++ D  + + + LS+WLQ++    LIS++
Sbjct: 308 HILPCRPTGVTLDIKKSSHKKLSKWLQSKSSAGLISSK 345


>01_07_0205 - 41978437-41980599,41980805-41981215
          Length = 857

 Score = 29.5 bits (63), Expect = 3.1
 Identities = 15/55 (27%), Positives = 27/55 (49%)
 Frame = +3

Query: 567 RMQQNRRNLSQWLQNRKHQLLISTRPLTTNPRFRPATEFLLAGTHHMTARPHMEV 731
           R Q ++ N ++W   R H L+  T  L +N  F      ++ G+ H+ +  HM +
Sbjct: 431 RAQPSQSNRTKW---RMHDLVHDTAVLISNVEFTTVLSSVMFGSPHVQSLHHMSI 482


>11_06_0412 - 23235670-23236512,23236804-23237838
          Length = 625

 Score = 28.7 bits (61), Expect = 5.4
 Identities = 21/80 (26%), Positives = 38/80 (47%), Gaps = 8/80 (10%)
 Frame = -2

Query: 457 SYISARTPVF*VSI-GVVYYGEKKNSSLPIHIYLLCTLRLCLN-------YFQIYSSSIL 302
           S++ A T    V + GV+     KN   P+   +L + R  +N       +F++ +S  L
Sbjct: 55  SFLDAVTDAILVYVMGVMQAAPFKNQLFPVWALMLVSFRSSINCLSSYGTFFELRNSLKL 114

Query: 301 LTISFLNIARDLFMEILIFW 242
           L +++LNI     +  + FW
Sbjct: 115 LAVAYLNITHGSKLWHVPFW 134


>08_01_0746 - 6959210-6959344,6959467-6959776,6960102-6960589
          Length = 310

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -1

Query: 725 HVRTCRHMVSSRQKKLRCWAEPG 657
           HV T R  V  R     CW+EPG
Sbjct: 262 HVETERRQVFGRDPYFACWSEPG 284


>06_01_0590 -
           4240260-4240883,4241063-4242238,4242691-4242760,
           4243739-4243803
          Length = 644

 Score = 28.3 bits (60), Expect = 7.2
 Identities = 24/79 (30%), Positives = 38/79 (48%), Gaps = 3/79 (3%)
 Frame = +1

Query: 184 GFGSSRFVLKGSCHKIVIHSRKSKSP*TGHVLYLETKS*AIYYLSIFGNNSDKDEAYITD 363
           G G SR+VL      IVIH  +++     H   L +KS  +  L I  + +  DE YI D
Sbjct: 17  GGGDSRYVLSELPSDIVIHVEEARF--YLHKFPLLSKSSLLQRLIIEASQNGTDEVYIHD 74

Query: 364 KYG---LEDCCSSFRHNIL 411
             G   + + C+ F + ++
Sbjct: 75  IPGGVKIFEICAKFCYGMV 93


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,992,370
Number of Sequences: 37544
Number of extensions: 407858
Number of successful extensions: 996
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 965
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 996
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2080154268
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)