Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E09
         (506 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal pr...    81   6e-16
Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical pr...    31   0.36 
AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical ...    28   4.5  
U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical p...    27   5.9  
U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical p...    27   5.9  
AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin p...    27   5.9  

>AC024776-21|AAK68479.1|   65|Caenorhabditis elegans Ribosomal
           protein, small subunitprotein 28 protein.
          Length = 65

 Score = 80.6 bits (190), Expect = 6e-16
 Identities = 41/54 (75%), Positives = 46/54 (85%), Gaps = 1/54 (1%)
 Frame = +1

Query: 67  MDKPNVLARVVKVLGRTGSQGQCTQVKVEFIG-ETSRQIIRNVKGPVRDGDILT 225
           MDK   LARV KV+GRTGSQGQCTQV+VEFI  + +R IIRNVKGPVR+GDILT
Sbjct: 1   MDKLT-LARVTKVIGRTGSQGQCTQVRVEFINDQNNRSIIRNVKGPVREGDILT 53


>Z81129-4|CAB03405.1|  330|Caenorhabditis elegans Hypothetical
           protein T23F1.6 protein.
          Length = 330

 Score = 31.5 bits (68), Expect = 0.36
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = +3

Query: 6   ETRQLWCTCVNCIKLDITSQNG*TQRSCSCREST 107
           ETRQ  C C   ++   + Q    Q SCSC+ ST
Sbjct: 22  ETRQASCGCAQSVQPTCSCQQASQQYSCSCQPST 55


>AC024810-8|AAU20830.1| 1446|Caenorhabditis elegans Hypothetical
           protein Y54E10A.11 protein.
          Length = 1446

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = -3

Query: 156 ELDLHLSTLALRTSTAEYFHDTSKNVGFIHF 64
           ++D H+     R S +EYF +T +N+    F
Sbjct: 505 DVDFHIIRNLARASNSEYFEETCRNINNFEF 535


>U00054-3|AAM48546.1| 12268|Caenorhabditis elegans Hypothetical
            protein K07E12.1b protein.
          Length = 12268

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 139  EYTGPENQYGRVLSRHEQERWVYP 68
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8246 EPTGPEDQK---LSKNEKGEWVYP 8266



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 139  EYTGPENQYGRVLSRHEQERWVYP 68
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9290 EPTGPEDQK---LSKNEKGEWVYP 9310


>U00054-2|AAA50715.2| 13100|Caenorhabditis elegans Hypothetical
            protein K07E12.1a protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 139  EYTGPENQYGRVLSRHEQERWVYP 68
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 139  EYTGPENQYGRVLSRHEQERWVYP 68
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355


>AY117398-1|AAM78593.1| 13100|Caenorhabditis elegans mesocentin
            protein.
          Length = 13100

 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 139  EYTGPENQYGRVLSRHEQERWVYP 68
            E TGPE+Q    LS++E+  WVYP
Sbjct: 8291 EPTGPEDQK---LSKNEKGEWVYP 8311



 Score = 27.5 bits (58), Expect = 5.9
 Identities = 13/24 (54%), Positives = 17/24 (70%)
 Frame = -2

Query: 139  EYTGPENQYGRVLSRHEQERWVYP 68
            E TGPE+Q    LS++E+  WVYP
Sbjct: 9335 EPTGPEDQK---LSKNEKGEWVYP 9355


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,890,377
Number of Sequences: 27780
Number of extensions: 163838
Number of successful extensions: 392
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 374
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 391
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)