Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_E07
(845 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone] flavopr... 428 e-119
UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila melanogaste... 395 e-109
UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F; ... 310 2e-83
UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|R... 271 2e-71
UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;... 230 3e-59
UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;... 229 5e-59
UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9; B... 224 2e-57
UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1; ... 223 4e-57
UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2... 220 3e-56
UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n... 219 5e-56
UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51... 216 5e-55
UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51... 214 3e-54
UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;... 213 4e-54
UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F; ... 213 6e-54
UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp... 210 3e-53
UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F; ... 210 3e-53
UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=... 206 5e-52
UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae ba... 206 5e-52
UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur binding:... 204 3e-51
UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F; ... 202 7e-51
UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep: ... 198 2e-49
UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n... 198 2e-49
UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 197 2e-49
UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=... 196 4e-49
UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2; V... 196 8e-49
UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter pro... 192 7e-48
UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreducta... 190 5e-47
UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase do... 188 2e-46
UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 188 2e-46
UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 186 8e-46
UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7; D... 185 1e-45
UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase bet... 184 2e-45
UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;... 184 2e-45
UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep... 180 4e-44
UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F; ... 180 4e-44
UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3; Dehalococcoide... 180 4e-44
UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 179 7e-44
UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase... 177 4e-43
UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, be... 175 9e-43
UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 ... 172 1e-41
UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F; ... 171 2e-41
UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;... 168 2e-40
UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium... 167 4e-40
UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium c... 166 7e-40
UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase, NADH-bi... 165 1e-39
UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa... 164 2e-39
UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia ja... 162 1e-38
UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;... 160 4e-38
UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=... 160 5e-38
UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase bet... 157 2e-37
UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit... 156 8e-37
UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n... 155 2e-36
UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7; Bacteria... 154 2e-36
UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,... 145 1e-33
UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1; Le... 144 2e-33
UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n... 142 8e-33
UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2; Actinomycetale... 142 1e-32
UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone oxidore... 140 4e-32
UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia pick... 138 2e-31
UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1; Symbio... 128 1e-28
UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3; Proteobacteria... 122 1e-26
UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F... 116 7e-25
UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: Htx... 114 3e-24
UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep: Hydro... 101 2e-20
UniRef50_A3Q2V2 Cluster: Respiratory-chain NADH dehydrogenase do... 92 2e-17
UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2; ... 85 3e-15
UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase do... 67 5e-10
UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3; Streptomy... 62 2e-08
UniRef50_A5N6H2 Cluster: RnfC related NADH dehydrogenase; n=2; C... 60 7e-08
UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase do... 58 4e-07
UniRef50_Q2J9U3 Cluster: Respiratory-chain NADH dehydrogenase do... 56 1e-06
UniRef50_A7G5W1 Cluster: NADH dehydrogenase family protein; n=4;... 55 3e-06
UniRef50_Q73PG1 Cluster: Na(+)-translocating NADH-quinone reduct... 54 5e-06
UniRef50_Q44SY7 Cluster: Electron transport complex, RnfABCDGE t... 54 5e-06
UniRef50_Q92CR5 Cluster: Lin1106 protein; n=13; Listeria|Rep: Li... 53 1e-05
UniRef50_A1WT48 Cluster: Electron transport complex, RnfABCDGE t... 53 1e-05
UniRef50_A0LLS5 Cluster: Electron transport complex, RnfABCDGE t... 52 1e-05
UniRef50_Q67R12 Cluster: Na+-transporting NADH-quinone reductase... 51 3e-05
UniRef50_Q21I18 Cluster: Electron transport complex, RnfABCDGE t... 51 3e-05
UniRef50_Q0EPY6 Cluster: Electron transport complex, RnfABCDGE t... 51 3e-05
UniRef50_Q0AAG9 Cluster: Electron transport complex, RnfABCDGE t... 51 4e-05
UniRef50_A7BY78 Cluster: Electron transport complex protein rnfC... 50 7e-05
UniRef50_UPI0000E87BCA Cluster: predicted NADH:ubiquinone oxidor... 49 1e-04
UniRef50_Q896I5 Cluster: RnfC/nqrF; n=18; Clostridiales|Rep: Rnf... 49 1e-04
UniRef50_A6PV28 Cluster: Respiratory-chain NADH dehydrogenase do... 49 2e-04
UniRef50_A1I872 Cluster: Electron transport complex, RnfABCDGE t... 49 2e-04
UniRef50_A6TJY1 Cluster: Respiratory-chain NADH dehydrogenase do... 48 2e-04
UniRef50_Q9WY86 Cluster: Electron transport complex protein, put... 48 4e-04
UniRef50_A4CB98 Cluster: Electron transport complex protein RnfC... 48 4e-04
UniRef50_Q482U5 Cluster: Electron transport complex, RnfABCDGE t... 47 5e-04
UniRef50_A6NTM2 Cluster: Putative uncharacterized protein; n=1; ... 47 7e-04
UniRef50_Q0PIB6 Cluster: Ethanolamine utilization Fe-S center pr... 46 0.001
UniRef50_Q8AA47 Cluster: Na+-transporting NADH:ubiquinone oxidor... 46 0.001
UniRef50_Q2SKU6 Cluster: Predicted NADH:ubiquinone oxidoreductas... 46 0.002
UniRef50_Q1Q5X5 Cluster: Conserved hypothetical iron sulfur prot... 46 0.002
UniRef50_A1AVH8 Cluster: Electron transport complex, RnfABCDGE t... 46 0.002
UniRef50_Q8RIJ6 Cluster: Nitrogen fixation iron-sulphur protein ... 45 0.002
UniRef50_Q31GU4 Cluster: NADH oxidoreductase, RnfABCDGE type, C ... 45 0.002
UniRef50_Q18V42 Cluster: Respiratory-chain NADH dehydrogenase do... 45 0.002
UniRef50_Q0VP39 Cluster: Electron transport complex protein rnfC... 45 0.002
UniRef50_Q603B2 Cluster: Electron transport complex, C subunit; ... 45 0.003
UniRef50_A1WUZ0 Cluster: Electron transport complex, RnfABCDGE t... 44 0.004
UniRef50_Q9KT88 Cluster: Electron transport complex protein rnfC... 44 0.004
UniRef50_A6TUS7 Cluster: Respiratory-chain NADH dehydrogenase do... 44 0.005
UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subuni... 44 0.005
UniRef50_Q1FMT5 Cluster: Respiratory-chain NADH dehydrogenase do... 43 0.008
UniRef50_Q52716 Cluster: Electron transport complex protein rnfC... 43 0.008
UniRef50_A6FIW1 Cluster: Electron transport complex protein RnfC... 42 0.015
UniRef50_A4B3H4 Cluster: Electron transport complex protein RnfC... 42 0.015
UniRef50_Q1EUM7 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.019
UniRef50_Q02B56 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.019
UniRef50_A6NT39 Cluster: Putative uncharacterized protein; n=1; ... 42 0.019
UniRef50_A3DI53 Cluster: Electron transport complex, RnfABCDGE t... 42 0.019
UniRef50_A1U014 Cluster: Respiratory-chain NADH dehydrogenase do... 42 0.019
UniRef50_A5N7M5 Cluster: RnfC; n=1; Clostridium kluyveri DSM 555... 41 0.034
UniRef50_A5EVI2 Cluster: Electron transport complex protein, C s... 41 0.034
UniRef50_A7B0F4 Cluster: Putative uncharacterized protein; n=1; ... 41 0.045
UniRef50_Q9XDM9 Cluster: Propanediol utilization protein; n=15; ... 40 0.059
UniRef50_Q2BP71 Cluster: Electron transport complex protein RnfC... 40 0.059
UniRef50_Q1ZEG2 Cluster: Electron transport complex protein RnfC... 40 0.059
UniRef50_Q9CNP2 Cluster: Electron transport complex protein rnfC... 40 0.079
UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=... 40 0.10
UniRef50_A7GJH3 Cluster: Respiratory-chain NADH dehydrogenase fa... 40 0.10
UniRef50_A1WTR7 Cluster: Electron transport complex, RnfABCDGE t... 40 0.10
UniRef50_Q5P537 Cluster: Electron transport complex protein rnfC... 39 0.14
UniRef50_Q5NLH4 Cluster: NADH:ubiquinone oxidoreductase subunit;... 39 0.14
UniRef50_Q15RL3 Cluster: Electron transport complex, RnfABCDGE t... 39 0.18
UniRef50_A6PDB0 Cluster: Electron transport complex, RnfABCDGE t... 39 0.18
UniRef50_A6BIN7 Cluster: Putative uncharacterized protein; n=1; ... 39 0.18
UniRef50_Q3A7W8 Cluster: Predicted NADH:ubiquinone oxidoreductas... 38 0.32
UniRef50_Q2NSZ7 Cluster: Putative iron-sulfur binding NADH dehyd... 38 0.32
UniRef50_Q1N6T4 Cluster: Electron transport complex protein RnfC... 38 0.32
UniRef50_A1SSX3 Cluster: Electron transport complex, RnfABCDGE t... 38 0.32
UniRef50_Q9HYB8 Cluster: Electron transport complex protein rnfC... 38 0.42
UniRef50_Q89AW8 Cluster: Electron transport complex protein rnfC... 38 0.42
UniRef50_Q5FP48 Cluster: Outer membrane protein; n=2; Gluconobac... 36 0.97
UniRef50_Q1AWR7 Cluster: Respiratory-chain NADH dehydrogenase do... 36 0.97
UniRef50_A0L5G6 Cluster: Electron transport complex, RnfABCDGE t... 36 0.97
UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit... 36 1.3
UniRef50_Q30W86 Cluster: Electron transfer protein; n=1; Desulfo... 36 1.7
UniRef50_Q3YL96 Cluster: CdiA; n=3; Escherichia coli|Rep: CdiA -... 35 2.2
UniRef50_A4RAI3 Cluster: Putative uncharacterized protein; n=1; ... 35 2.2
UniRef50_Q0HIH8 Cluster: Electron transport complex, RnfABCDGE t... 34 3.9
UniRef50_Q0F0I1 Cluster: Electron transport complex protein RnfC... 34 3.9
UniRef50_A7QGL6 Cluster: Chromosome chr12 scaffold_93, whole gen... 34 3.9
UniRef50_P57215 Cluster: Electron transport complex protein rnfC... 34 3.9
UniRef50_Q82NN9 Cluster: Putative uncharacterized protein; n=1; ... 34 5.2
UniRef50_A6VVJ2 Cluster: Electron transport complex, RnfABCDGE t... 34 5.2
UniRef50_A6M0M4 Cluster: Respiratory-chain NADH dehydrogenase do... 34 5.2
UniRef50_A0JX02 Cluster: Peptidase S9, prolyl oligopeptidase act... 34 5.2
UniRef50_Q6LTT0 Cluster: Hypothetical type I restriction-modific... 33 6.8
UniRef50_A1HJR3 Cluster: Putative uncharacterized protein; n=1; ... 33 6.8
UniRef50_Q0YTQ7 Cluster: Putative uncharacterized protein precur... 33 9.0
>UniRef50_P49821 Cluster: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor; n=215; cellular
organisms|Rep: NADH dehydrogenase [ubiquinone]
flavoprotein 1, mitochondrial precursor - Homo sapiens
(Human)
Length = 464
Score = 428 bits (1054), Expect = e-119
Identities = 191/227 (84%), Positives = 207/227 (91%), Gaps = 1/227 (0%)
Frame = +1
Query: 160 VPVRFQ-QTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDW 336
V VRF T AP K +G L D DR+FTNLYGRH+WRLKG+L+RGDWY TKEILLKG DW
Sbjct: 16 VSVRFSGDTTAPKKTSFGSLKDEDRIFTNLYGRHDWRLKGSLSRGDWYKTKEILLKGPDW 75
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ E+KTSGLRGRGGAGFPTG+KWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI+RHDP
Sbjct: 76 ILGEIKTSGLRGRGGAGFPTGLKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREILRHDP 135
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
HKL+EGCL+ GRAMGA+AAYIYIRGEFYNEASNLQVAI EAY+AGLIGKN+CGSGYDFD+
Sbjct: 136 HKLLEGCLVGGRAMGARAAYIYIRGEFYNEASNLQVAIREAYEAGLIGKNACGSGYDFDV 195
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
FV RGAGAYICGEETALI SIEGKQG PRLKPPFP DVG+FGCPTTV
Sbjct: 196 FVVRGAGAYICGEETALIESIEGKQGKPRLKPPFPADVGVFGCPTTV 242
>UniRef50_A1ZAW7 Cluster: CG11423-PA; n=2; Drosophila
melanogaster|Rep: CG11423-PA - Drosophila melanogaster
(Fruit fly)
Length = 702
Score = 395 bits (973), Expect = e-109
Identities = 170/216 (78%), Positives = 194/216 (89%)
Frame = +1
Query: 193 SKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRG 372
+K +GPLAD+DR+FTNLYGRH+WRLK A+ RGDWY TKEI+ KG WIVNE+KTSGLRG
Sbjct: 251 TKTTFGPLADADRIFTNLYGRHDWRLKAAMKRGDWYKTKEIIAKGDKWIVNEIKTSGLRG 310
Query: 373 RGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 552
RGGAGFP+G+KWSFM+KP DGRPK+LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR
Sbjct: 311 RGGAGFPSGLKWSFMHKPPDGRPKFLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 370
Query: 553 AMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICG 732
AMGA +IYIRGEFYNEA NLQ AI EAY+AG +GKN+CGSG+DFD++V RGAGAYICG
Sbjct: 371 AMGANTGFIYIRGEFYNEACNLQYAIIEAYKAGYLGKNACGSGFDFDLYVQRGAGAYICG 430
Query: 733 EETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTVT 840
EET+LI S+EGK G PR KPPFP D+G+FGCP+TVT
Sbjct: 431 EETSLIESLEGKAGKPRNKPPFPADIGVFGCPSTVT 466
>UniRef50_Q4UKA6 Cluster: NADH-quinone oxidoreductase subunit F;
n=11; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F - Rickettsia felis (Rickettsia azadi)
Length = 422
Score = 310 bits (762), Expect = 2e-83
Identities = 139/208 (66%), Positives = 170/208 (81%)
Frame = +1
Query: 214 LADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFP 393
L + D++FTNL+G+ LK + RGDW TK +L KG ++I+ E+K SGLRGRGGAGF
Sbjct: 2 LKEEDKIFTNLHGQQSHDLKSSKKRGDWDNTKALLDKGREFIIEEVKKSGLRGRGGAGFS 61
Query: 394 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 573
TGMKWSFM K S +P YLVVNADE EPGTCKDR+I+R +PHKL+EGCL+A A+GA
Sbjct: 62 TGMKWSFMPKNS-AKPCYLVVNADESEPGTCKDRDILRFEPHKLIEGCLLASFAIGANDC 120
Query: 574 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIX 753
YIYIRGEFYNEASN+Q A+ EAY+ GLIGKN+CGSG+D +I++HRGAGAYICGEETAL+
Sbjct: 121 YIYIRGEFYNEASNIQRALDEAYKDGLIGKNACGSGFDCNIYLHRGAGAYICGEETALLE 180
Query: 754 SIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
S+EGK+G PRLKPPFP GL+GCPTT+
Sbjct: 181 SLEGKKGMPRLKPPFPAGFGLYGCPTTI 208
>UniRef50_A1Z9Z7 Cluster: CG8102-PA, isoform A; n=4; Sophophora|Rep:
CG8102-PA, isoform A - Drosophila melanogaster (Fruit
fly)
Length = 481
Score = 271 bits (664), Expect = 2e-71
Identities = 122/215 (56%), Positives = 153/215 (71%), Gaps = 1/215 (0%)
Frame = +1
Query: 196 KDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGR 375
K K+GPL D DRVF NLYGRH+WRL GA RGDW+ T E+L +G +WI+ ++ SGLRGR
Sbjct: 52 KTKFGPLDDCDRVFQNLYGRHDWRLHGACQRGDWHRTAELLEQGPEWIMKQVSKSGLRGR 111
Query: 376 GGAGFPTGMKWSFMNKP-SDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGR 552
GGAGF G+KW F+ + S+ PK ++VN EGEPGTCKDR+I+RH+PHKL+EG L+ G
Sbjct: 112 GGAGFYAGLKWEFLRQTKSEKVPKMVIVNCAEGEPGTCKDRDILRHEPHKLIEGILLVGV 171
Query: 553 AMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICG 732
AMG A +YIR FYNEA NL A+AEAY GL+G + CG+G FD+ V RG Y+CG
Sbjct: 172 AMGCGRAIVYIRNRFYNEACNLHFALAEAYHHGLLGNSVCGTGIKFDVMVQRG-DRYLCG 230
Query: 733 EETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
EETA+I + GK G PR +PPF + G F P V
Sbjct: 231 EETAMINCLMGKLGRPRRRPPFLTEKGYFEHPCLV 265
>UniRef50_Q1IS37 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Acidobacteria bacterium (strain Ellin345)
Length = 439
Score = 230 bits (563), Expect = 3e-59
Identities = 108/206 (52%), Positives = 145/206 (70%)
Frame = +1
Query: 220 DSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTG 399
D +V ++ +G+ + L + ++ L D I+NE+K S LRGRGGAGFPTG
Sbjct: 9 DEVKVISSRWGKGATDIDRYLELDGYKAVQKALTMTPDAIINEVKASNLRGRGGAGFPTG 68
Query: 400 MKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYI 579
+KWSF+ K S +PKY++ N DE EPGTCKDR I HDPH ++EG +IAG A+GA++AYI
Sbjct: 69 LKWSFVPKES-AKPKYILCNGDESEPGTCKDRLIFEHDPHGVIEGAIIAGLAVGAKSAYI 127
Query: 580 YIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSI 759
Y+RGE+ + +Q AIA+AY G IGKN GSG DFD++ H GAGAY GEE+AL+ S+
Sbjct: 128 YLRGEYRYLSIIMQKAIADAYAKGFIGKNIFGSGKDFDVYWHGGAGAYEVGEESALMESL 187
Query: 760 EGKQGXPRLKPPFPXDVGLFGCPTTV 837
EGK+G PR++PPFP VGL+G PT +
Sbjct: 188 EGKRGIPRIRPPFPAVVGLWGGPTVI 213
>UniRef50_Q1IZW8 Cluster: NADH-quinone oxidoreductase, F subunit;
n=1; Deinococcus geothermalis DSM 11300|Rep:
NADH-quinone oxidoreductase, F subunit - Deinococcus
geothermalis (strain DSM 11300)
Length = 446
Score = 229 bits (561), Expect = 5e-59
Identities = 107/192 (55%), Positives = 133/192 (69%)
Frame = +1
Query: 262 WRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP 441
W L L G + + D ++ E+K SGLRGRGGAGF TG+KWSFM +DG+
Sbjct: 33 WTLDFYLRHGGYQGVRRAFALRPDAVIEEVKKSGLRGRGGAGFATGLKWSFMPL-NDGKQ 91
Query: 442 KYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 621
Y++ NADE EPG+ KDR ++ DPH+L+EG LI G AM A YIYIRGE+ + A +
Sbjct: 92 HYIICNADESEPGSFKDRYLLSEDPHQLIEGMLIGGYAMRASVGYIYIRGEYVHAAGRVW 151
Query: 622 VAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFP 801
AI EA AGL+GKN GSG+DFD+ VHRGAGAYICGEETAL+ S+EG + PRLKPPFP
Sbjct: 152 AAIREARAAGLLGKNVLGSGFDFDLQVHRGAGAYICGEETALMNSLEGLRANPRLKPPFP 211
Query: 802 XDVGLFGCPTTV 837
GL+G PTT+
Sbjct: 212 AAAGLYGMPTTI 223
>UniRef50_Q8F7Q4 Cluster: NADH dehydrogenase I, F subunit; n=9;
Bacteria|Rep: NADH dehydrogenase I, F subunit -
Leptospira interrogans
Length = 443
Score = 224 bits (548), Expect = 2e-57
Identities = 102/177 (57%), Positives = 131/177 (74%)
Frame = +1
Query: 307 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 486
K+ L D I+ E+K SGLRGRGGAGFPTG+KWSF+ K +PKY++ NADEGEPGT
Sbjct: 32 KKALQMKPDDIIAEVKKSGLRGRGGAGFPTGLKWSFIPKDIP-KPKYIICNADEGEPGTF 90
Query: 487 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 666
KDR+++ + PH+++EG +I RA+G+ + YIRGEF A +Q AI EAY G +GKN
Sbjct: 91 KDRKLIENLPHQIIEGMIIGARAIGSNKGFFYIRGEFQKGAKAMQAAIDEAYSKGYLGKN 150
Query: 667 SCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
GSG+DFD+ ++ GAGAYICGEETALI S+EG++G PRLKPPFP GL+ PT V
Sbjct: 151 ILGSGFDFDLILYEGAGAYICGEETALINSLEGRRGHPRLKPPFPAVSGLYRSPTVV 207
>UniRef50_Q56222 Cluster: NADH-quinone oxidoreductase subunit 1;
n=6; Bacteria|Rep: NADH-quinone oxidoreductase subunit 1
- Thermus thermophilus (strain HB8 / ATCC 27634 / DSM
579)
Length = 438
Score = 223 bits (545), Expect = 4e-57
Identities = 106/193 (54%), Positives = 133/193 (68%), Gaps = 1/193 (0%)
Frame = +1
Query: 262 WRLKGALARGDWYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGR 438
W L L G + K +L + T D ++ E+K SGLRGRGGAGFPTG+KWSFM K DG+
Sbjct: 27 WTLDYYLRHGGYETAKRVLKEKTPDEVIEEVKRSGLRGRGGAGFPTGLKWSFMPK-DDGK 85
Query: 439 PKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNL 618
YL+ NADE EPG+ KDR I+ PH L+EG ++AG A+ A YIY+RGE+ A L
Sbjct: 86 QHYLICNADESEPGSFKDRYILEDVPHLLIEGMILAGYAIRATVGYIYVRGEYRRAADRL 145
Query: 619 QVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPF 798
+ AI EA G +GKN G+ + FD+ VHRGAGAYICGEETAL+ S+EG + PRLKPPF
Sbjct: 146 EQAIKEARARGYLGKNLFGTDFSFDLHVHRGAGAYICGEETALMNSLEGLRANPRLKPPF 205
Query: 799 PXDVGLFGCPTTV 837
P GL+G PTT+
Sbjct: 206 PAQSGLWGKPTTI 218
>UniRef50_P56913 Cluster: NADH-quinone oxidoreductase subunit F 2;
n=100; Proteobacteria|Rep: NADH-quinone oxidoreductase
subunit F 2 - Rhizobium meliloti (Sinorhizobium
meliloti)
Length = 421
Score = 220 bits (538), Expect = 3e-56
Identities = 99/169 (58%), Positives = 126/169 (74%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 510
D IV +K S LRGRGGAGFPTGMKWSF+ K + G+PKYL NADEGEPGT KDR IM
Sbjct: 40 DEIVELVKESNLRGRGGAGFPTGMKWSFVPKAA-GKPKYLCCNADEGEPGTFKDRIIMER 98
Query: 511 DPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDF 690
DPH+L+EG ++ A+GA+ AY+YIRGE+ ++ AIAEA++ G +G GSG++F
Sbjct: 99 DPHQLIEGLAVSAYAIGAETAYVYIRGEYVTAIRRMEQAIAEAHENGYLGIGILGSGFNF 158
Query: 691 DIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ +HRGAGAYICGEETA++ S+EGK+ PRLKPPFP GL+ PT +
Sbjct: 159 MVHIHRGAGAYICGEETAMLESLEGKRAQPRLKPPFPAVAGLYASPTVI 207
>UniRef50_Q9WY70 Cluster: NADP-reducing hydrogenase, subunit C; n=9;
Bacteria|Rep: NADP-reducing hydrogenase, subunit C -
Thermotoga maritima
Length = 545
Score = 219 bits (536), Expect = 5e-56
Identities = 104/191 (54%), Positives = 134/191 (70%)
Frame = +1
Query: 265 RLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPK 444
R++ +AR ++ + L I+ E+K SGLRGRGGAGFPTG+KW F K S + K
Sbjct: 124 RIEEYIARDGYFALAKALQMEPGEIIEEIKRSGLRGRGGAGFPTGLKWEFTYKASADQ-K 182
Query: 445 YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQV 624
Y++ NADEGEPGT KDR IM DPH L+EG +IAG A+GA YIYIRGE+++ L+
Sbjct: 183 YVLCNADEGEPGTFKDRLIMEGDPHSLIEGMIIAGYAVGATKGYIYIRGEYHSSIEILKK 242
Query: 625 AIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPX 804
A+ +AY+ G +G+N GSG++FD+ + GAGAY+ GEETALI SIEGK PRLKPP+P
Sbjct: 243 AVEQAYEYGFLGENILGSGFNFDLKIRLGAGAYVAGEETALIESIEGKPARPRLKPPYPP 302
Query: 805 DVGLFGCPTTV 837
GLFG PT V
Sbjct: 303 TFGLFGKPTVV 313
>UniRef50_Q2S5I8 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family; n=2; Sphingobacteriales genera incertae
sedis|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family - Salinibacter ruber (strain DSM 13855)
Length = 464
Score = 216 bits (528), Expect = 5e-55
Identities = 93/167 (55%), Positives = 128/167 (76%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+ +E+K SGL GRGGAGFPTG+KW+FM +P D RP+++ VNADE EPGT KDR++M ++P
Sbjct: 68 VTDEVKASGLTGRGGAGFPTGIKWTFMPEP-DERPRFIGVNADESEPGTFKDRQVMEYNP 126
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
H ++EG L+AG A+ AY+YIRGE+ + +L+ + AY+AG +G+N GS + DI
Sbjct: 127 HLMLEGILLAGYALHIDTAYVYIRGEYTDWIVHLKEQLENAYEAGYVGENIMGSDFTMDI 186
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+H+GAGAYICGEET+L+ S+EGK+G PR KPPFP G+FG PTT+
Sbjct: 187 VLHKGAGAYICGEETSLMESLEGKRGYPRYKPPFPAQSGIFGSPTTI 233
>UniRef50_A2DV30 Cluster: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein; n=1; Trichomonas vaginalis
G3|Rep: Respiratory-chain NADH dehydrogenase 51 Kd
subunit family protein - Trichomonas vaginalis G3
Length = 425
Score = 214 bits (522), Expect = 3e-54
Identities = 100/204 (49%), Positives = 137/204 (67%)
Frame = +1
Query: 226 DRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMK 405
DR+FTN+ G E L+ + RGDW T++I+ G +I++E++ S LRGR GAG T K
Sbjct: 15 DRIFTNINGVDESDLQSCMKRGDWNDTQKIIANGKKYILDEVRKSELRGRSGAGLLTYKK 74
Query: 406 WSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYI 585
W + S P YL +N +E EPGTCKDR+I++++P K++EG +A A+ Y+Y+
Sbjct: 75 WEEI-LTSKQLPHYLCINGNESEPGTCKDRQILQNEPQKIIEGAFLASYALDVHRCYVYV 133
Query: 586 RGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEG 765
RG + EA LQ+AI EA +A LIGKN+ G+DF+I VH GAGAY+CGE+T L+ S+EG
Sbjct: 134 RGHYTKEAKRLQLAIDEAKKANLIGKNN-KFGWDFEINVHPGAGAYVCGEQTGLMTSLEG 192
Query: 766 KQGXPRLKPPFPXDVGLFGCPTTV 837
G PR KPP P + GLF CPT V
Sbjct: 193 NPGTPRQKPPQPFEKGLFQCPTVV 216
>UniRef50_A5UVG4 Cluster: NADH-quinone oxidoreductase, F subunit;
n=9; Bacteria|Rep: NADH-quinone oxidoreductase, F
subunit - Roseiflexus sp. RS-1
Length = 449
Score = 213 bits (521), Expect = 4e-54
Identities = 98/167 (58%), Positives = 122/167 (73%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
IV +K SGLRGRGGAGFPTG+KW F+ P P+YL+ N DE EPGT + +I+ +P
Sbjct: 61 IVQTVKDSGLRGRGGAGFPTGVKWGFL--PKGVYPRYLLCNCDESEPGTFNNHQIIDRNP 118
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
H+L+EG I+ A+ A AYIYIRGEF A L+ AIA+AY+ G +G+N G GYD DI
Sbjct: 119 HQLIEGIAISAYAIEAHTAYIYIRGEFAAAARRLERAIAQAYERGFLGRNIFGKGYDLDI 178
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+VHRGAGAYICGEETAL+ S+EGK G PRL+PPFP GL+G PT +
Sbjct: 179 YVHRGAGAYICGEETALMESLEGKIGQPRLRPPFPAVAGLYGKPTII 225
>UniRef50_Q9XAQ9 Cluster: NADH-quinone oxidoreductase subunit F;
n=32; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Streptomyces coelicolor
Length = 449
Score = 213 bits (519), Expect = 6e-54
Identities = 98/177 (55%), Positives = 125/177 (70%)
Frame = +1
Query: 307 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 486
++ L D ++ +K SGLRGRGGAGFPTGMKW F+ + DG+P YLVVNADE EPGTC
Sbjct: 46 RKALAMAPDDLIAYVKESGLRGRGGAGFPTGMKWQFIPQ-GDGKPHYLVVNADESEPGTC 104
Query: 487 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 666
KD ++ +PH L+EG +IA A+ + A+IY+RGE L A+ EAY AG +G+N
Sbjct: 105 KDIPLLFANPHSLIEGIVIACYAIRSSHAFIYLRGEVVPVLRRLHEAVREAYAAGFLGEN 164
Query: 667 SCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
GSG D + VH GAGAYICGEETAL+ S+EG++G PRL+PPFP GL+ CPT V
Sbjct: 165 ILGSGLDLTLTVHAGAGAYICGEETALLDSLEGRRGQPRLRPPFPAVAGLYACPTVV 221
>UniRef50_A6FCN1 Cluster: NuoF2 NADH I CHAIN F; n=1; Moritella sp.
PE36|Rep: NuoF2 NADH I CHAIN F - Moritella sp. PE36
Length = 425
Score = 210 bits (514), Expect = 3e-53
Identities = 97/179 (54%), Positives = 126/179 (70%)
Frame = +1
Query: 301 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 480
L K + D +++ +K S LRGRGGAGFPTG+KWSF+ K DG+ YL NADEGEPG
Sbjct: 30 LKKILTTYSPDKVIDAVKASNLRGRGGAGFPTGLKWSFVPK-DDGKIHYLCCNADEGEPG 88
Query: 481 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 660
T KDR +M DPH+++EG +IA A+ A+ AYIYIRGE+ + AI AY G +G
Sbjct: 89 TFKDRLLMERDPHRVIEGMIIAAYAIRAEVAYIYIRGEYGLSIDMITQAIKAAYAKGYLG 148
Query: 661 KNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
KN + + +I+VH+GAGAYICGEETAL+ SIEG++G P+LKPPFP GL+ CPT +
Sbjct: 149 KNIFNTDFCLNIYVHKGAGAYICGEETALLESIEGRRGQPKLKPPFPAVSGLYDCPTVI 207
>UniRef50_Q9I0J7 Cluster: NADH-quinone oxidoreductase subunit F;
n=78; Bacteria|Rep: NADH-quinone oxidoreductase subunit
F - Pseudomonas aeruginosa
Length = 448
Score = 210 bits (513), Expect = 3e-53
Identities = 101/177 (57%), Positives = 123/177 (69%)
Frame = +1
Query: 307 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 486
K + D IV +K SGL+GRGGAGFPTG+KW M K +YL+ NADE EP T
Sbjct: 48 KALTQMAQDDIVQTVKDSGLKGRGGAGFPTGVKWGLMPKDESLNIRYLLCNADEMEPNTW 107
Query: 487 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 666
KDR +M PH LVEG LI+ RA+ A YI++RGE+ + A NL AI EA AGL+GKN
Sbjct: 108 KDRMLMEQLPHLLVEGMLISARALKAYRGYIFLRGEYVDAARNLNRAIDEAKAAGLLGKN 167
Query: 667 SCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
GSG+DF++FVH GAG YICGEETALI S+EG++ PR KPPFP VG++G PT V
Sbjct: 168 ILGSGFDFELFVHTGAGRYICGEETALINSLEGRRANPRSKPPFPAAVGVWGKPTCV 224
>UniRef50_Q2LQE7 Cluster: NADH-quinone oxidoreductase chain F; n=1;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 574
Score = 206 bits (503), Expect = 5e-52
Identities = 100/167 (59%), Positives = 122/167 (73%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ E+K + LRGRGGAGFP G+KW F+ K +D +P YL+ NADEGEPGT KDR+IM +DP
Sbjct: 211 ILEEVKKANLRGRGGAGFPAGVKWGFIPKDTD-KPVYLICNADEGEPGTYKDRQIMEYDP 269
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
H L+EG IA RA+GA+ A+IYIRGEF A L+ AI EA G + + DI
Sbjct: 270 HLLIEGMAIAARAIGARQAFIYIRGEFAWIADILEKAIGEAKADGQLS--------ELDI 321
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
VHRGAGAY+CGEETALI SIEGK+G PR++PPFP GL+GCPT V
Sbjct: 322 IVHRGAGAYVCGEETALIESIEGKRGQPRIRPPFPAVEGLYGCPTIV 368
>UniRef50_A7CUG0 Cluster: NADH dehydrogenase; n=1; Opitutaceae
bacterium TAV2|Rep: NADH dehydrogenase - Opitutaceae
bacterium TAV2
Length = 478
Score = 206 bits (503), Expect = 5e-52
Identities = 99/187 (52%), Positives = 130/187 (69%), Gaps = 1/187 (0%)
Frame = +1
Query: 280 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 459
L G + + K + + + + +E+K SG+RGRGGAGFP G+KW +++ S G+P YL+VN
Sbjct: 41 LRNGGYEILKRAVARKPEDLRDEVKKSGIRGRGGAGFPCGVKWGLVDRKS-GKPIYLIVN 99
Query: 460 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 639
ADE EPGT KDR I+ DPH+L+EG +I+ A + AYIYIRGE A L+ AIAEA
Sbjct: 100 ADESEPGTFKDRYIIHQDPHQLIEGTIISCFANDVKQAYIYIRGEMPEGARILERAIAEA 159
Query: 640 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPP-FPXDVGL 816
+G N G+GY +I+VHRGAGAYICGEET LI S+EGK+ PR+KPP FP +GL
Sbjct: 160 RAKNFVGPNILGTGYSCEIYVHRGAGAYICGEETGLIESLEGKRANPRIKPPYFPAVLGL 219
Query: 817 FGCPTTV 837
+ CPT V
Sbjct: 220 YQCPTIV 226
>UniRef50_Q2AG83 Cluster: 4Fe-4S ferredoxin, iron-sulfur
binding:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=4; Bacteria|Rep: 4Fe-4S ferredoxin,
iron-sulfur binding:Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Halothermothrix orenii H 168
Length = 632
Score = 204 bits (497), Expect = 3e-51
Identities = 103/221 (46%), Positives = 140/221 (63%), Gaps = 3/221 (1%)
Frame = +1
Query: 184 QAPSKDKYGPL-ADSDRVFTNLYGRHEWR-LKGALARGDWY-LTKEILLKGTDWIVNEMK 354
+A S +K P A+ +R+ + G + L LA G + L+K +L + + E+
Sbjct: 136 EAYSNEKEIPFYANQNRIALSNCGNIDPEDLDDYLAHGGYKALSKALLEMSPEEVCKEVT 195
Query: 355 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 534
SGLRGRGG GFPTG KW F + + KY++VN DEG+PG DR IM DPH+++EG
Sbjct: 196 ESGLRGRGGGGFPTGKKWEFAYREKADQ-KYVIVNGDEGDPGAFMDRSIMEGDPHRVIEG 254
Query: 535 CLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGA 714
IAG A GA YIY+R E+ L+ AI +AY GL+G++ GSG+DFD+ + GA
Sbjct: 255 ITIAGYATGATKGYIYVRAEYPLAVKRLRKAINDAYDQGLLGEDILGSGFDFDLMIKEGA 314
Query: 715 GAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
GA++CGEETAL+ SIEGK+G P KPPFP GL+G PTT+
Sbjct: 315 GAFVCGEETALMASIEGKRGMPNPKPPFPAQSGLWGKPTTI 355
>UniRef50_O66841 Cluster: NADH-quinone oxidoreductase subunit F;
n=2; Aquifex aeolicus|Rep: NADH-quinone oxidoreductase
subunit F - Aquifex aeolicus
Length = 426
Score = 202 bits (494), Expect = 7e-51
Identities = 101/187 (54%), Positives = 127/187 (67%), Gaps = 1/187 (0%)
Frame = +1
Query: 280 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSF-MNKPSDGRPKYLVV 456
L G + ++ L + I++ + S LRGRGGAGFPTG KW F + P P+Y +
Sbjct: 35 LKDGGYQALEKALNMSPEEIIDWVDKSTLRGRGGAGFPTGKKWKFAVQNPG---PRYFIC 91
Query: 457 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
NADE EPGT KDR I+ DPH L+EG +I+ A+GA AYIYIRGE+ L+ AI E
Sbjct: 92 NADESEPGTFKDRIIIERDPHLLIEGIIISSYAIGANEAYIYIRGEYPAGYYILRDAIEE 151
Query: 637 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGL 816
A + G +GKN GSG+D +I+V RGAGAYICGEETALI S+EGK+G PRLKPP+P GL
Sbjct: 152 AKKKGFLGKNILGSGFDLEIYVARGAGAYICGEETALIESLEGKRGHPRLKPPYPVQKGL 211
Query: 817 FGCPTTV 837
+G PT V
Sbjct: 212 WGKPTVV 218
>UniRef50_A4MHV7 Cluster: NADH dehydrogenase; n=5; Bacteria|Rep:
NADH dehydrogenase - Geobacter bemidjiensis Bem
Length = 593
Score = 198 bits (482), Expect = 2e-49
Identities = 88/167 (52%), Positives = 118/167 (70%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++E+K SGLRGRGG GFPTGMKWSF S G KYL+ NADEG+PG DR I+ DP
Sbjct: 153 VIDEVKKSGLRGRGGGGFPTGMKWSFC-AASPGNHKYLICNADEGDPGAFMDRSILEGDP 211
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
+ ++EG +IA A+G A Y+Y+R E+ LQ A+ Y+ G +GKN G G+DFD+
Sbjct: 212 YCVIEGMMIAAYAIGCDAGYVYVRAEYPLAIDRLQKALDTCYEKGYLGKNIQGWGFDFDM 271
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ +GAGA++CGEETAL+ SIEG++G PR +PPFP GL+G PT +
Sbjct: 272 RIKKGAGAFVCGEETALMASIEGERGMPRPRPPFPAVKGLWGFPTNI 318
>UniRef50_O27592 Cluster: NADP-reducing hydrogenase, subunit C; n=4;
cellular organisms|Rep: NADP-reducing hydrogenase,
subunit C - Methanobacterium thermoautotrophicum
Length = 630
Score = 198 bits (482), Expect = 2e-49
Identities = 95/186 (51%), Positives = 124/186 (66%)
Frame = +1
Query: 280 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 459
LA G + L D ++ E+K SGLRGRGGAGFPT +KWS + + KYL+ N
Sbjct: 152 LATGGYRGLMRALEMEPDEVIEEVKDSGLRGRGGAGFPTWLKWSLCRQEAS-EVKYLICN 210
Query: 460 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 639
ADEG+PG +R ++ DPH L+EG LIA A+GA+ AYIY R E+ L+VAI++
Sbjct: 211 ADEGDPGAFMNRSLIEGDPHALLEGILIASYAVGAREAYIYCRAEYPLALERLRVAISDL 270
Query: 640 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLF 819
GL+GK+ GSG+D DI + GAGA++CGEETALI SIEGK+G PR +PPFP GL+
Sbjct: 271 RNLGLLGKDILGSGFDLDIKIKEGAGAFVCGEETALISSIEGKRGMPRTRPPFPTTRGLW 330
Query: 820 GCPTTV 837
G PT +
Sbjct: 331 GKPTVI 336
>UniRef50_Q8RBC9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=11; Bacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Thermoanaerobacter tengcongensis
Length = 596
Score = 197 bits (481), Expect = 2e-49
Identities = 92/191 (48%), Positives = 130/191 (68%), Gaps = 1/191 (0%)
Frame = +1
Query: 268 LKGALARGDWYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPK 444
++ A+A + ++L + T + ++ E+K SGLRGRGG GFPTG+KW F K + PK
Sbjct: 130 IREAIAFDGYKALAKVLTEMTPEQVIEEVKKSGLRGRGGGGFPTGVKWEFAYKQKE-TPK 188
Query: 445 YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQV 624
Y+V NADEG+PG DR I+ DPH ++E IAG A+GA YIY+R E+ L++
Sbjct: 189 YVVCNADEGDPGAFMDRSILEGDPHSVLEAMAIAGYAIGANHGYIYVRAEYPLAVKRLKI 248
Query: 625 AIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPX 804
AI +A + GL+GK+ G+G+DFDI + GAGA++CGEETAL+ SI GK+G PR +PPFP
Sbjct: 249 AIQQAREYGLLGKDIFGTGFDFDIEIRLGAGAFVCGEETALLNSIMGKRGEPRPRPPFPA 308
Query: 805 DVGLFGCPTTV 837
G++G PT +
Sbjct: 309 VKGVWGKPTII 319
>UniRef50_Q2LS97 Cluster: NADH-quinone oxidoreductase chain F; n=2;
Syntrophus aciditrophicus SB|Rep: NADH-quinone
oxidoreductase chain F - Syntrophus aciditrophicus
(strain SB)
Length = 638
Score = 196 bits (479), Expect = 4e-49
Identities = 92/187 (49%), Positives = 123/187 (65%), Gaps = 1/187 (0%)
Frame = +1
Query: 280 LARGDWYLTKEILLK-GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 456
L +G + K+ L + D ++ +K SGLRGRGGAGFP G+KWSF+ P KY++
Sbjct: 229 LEKGGYAAIKKALAEYQPDDVIAIVKDSGLRGRGGAGFPAGVKWSFL--PKGDMQKYVIC 286
Query: 457 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
NADEGEPGT KDR +M +PH L+EG ++ G A GA YIYIRGE+ LQ AI +
Sbjct: 287 NADEGEPGTYKDRILMEENPHGLLEGMMLCGYATGATVGYIYIRGEYRRSIERLQRAIDQ 346
Query: 637 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGL 816
A + G++G N GS + FDIF+ G GAY+CGEE++L+ S+EGK+G PR +PPFP G
Sbjct: 347 AREKGILGDNIFGSSFRFDIFIKEGGGAYVCGEESSLMNSMEGKRGYPRFRPPFPAGAGF 406
Query: 817 FGCPTTV 837
P+ V
Sbjct: 407 LAKPSNV 413
>UniRef50_Q2C5T6 Cluster: NADH dehydrogenase I, F subunit; n=2;
Vibrionaceae|Rep: NADH dehydrogenase I, F subunit -
Photobacterium sp. SKA34
Length = 427
Score = 196 bits (477), Expect = 8e-49
Identities = 90/183 (49%), Positives = 124/183 (67%)
Frame = +1
Query: 289 GDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 468
G + I+ + + ++ E+K SGLRG GG GFPTG+KW F+ K + P YLVVN DE
Sbjct: 24 GGYQSLNSIIGQPREPLLAELKASGLRGCGGGGFPTGVKWGFLAKDAS-HPVYLVVNLDE 82
Query: 469 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 648
EPG+ KDR+++ DPH ++EG + + +GA A+++IRGE+ A L+ A+ EA A
Sbjct: 83 SEPGSFKDRQVLYRDPHTILEGVIASSYILGADKAFVFIRGEYREGAKGLEKAVQEARAA 142
Query: 649 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCP 828
GL+G+N GSG+D D+ VH AG YICGEETAL+ ++EG +G PR KPPFP GL+G P
Sbjct: 143 GLVGENVMGSGWDLDVDVHLSAGRYICGEETALLNALEGYRGNPRSKPPFPIVKGLWGQP 202
Query: 829 TTV 837
T V
Sbjct: 203 TIV 205
>UniRef50_A1ALP4 Cluster: NADH dehydrogenase; n=1; Pelobacter
propionicus DSM 2379|Rep: NADH dehydrogenase -
Pelobacter propionicus (strain DSM 2379)
Length = 427
Score = 192 bits (469), Expect = 7e-48
Identities = 102/208 (49%), Positives = 131/208 (62%), Gaps = 3/208 (1%)
Frame = +1
Query: 223 SDRVFTNL-YGRHEWRLKGALARGDWYLTKEIL--LKGTDWIVNEMKTSGLRGRGGAGFP 393
S+R+F N LK RG + + L L+ D + E+ SGLRGRGGAGFP
Sbjct: 3 SERIFFNFPVTADSHTLKAYQGRGGYQALENALKTLQPID-VEKEVMASGLRGRGGAGFP 61
Query: 394 TGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 573
TG KWSF+NK + YL NADEGEPGT KDR I H+ H+L+EG ++A A+ + A
Sbjct: 62 TGSKWSFVNKKAP--VVYLCCNADEGEPGTFKDRWIFEHNSHQLIEGMILAAYALNVRNA 119
Query: 574 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIX 753
+IYIRGEF L A++EAY+AG +G+N GS + DI V +G GAY+CGEE++L
Sbjct: 120 FIYIRGEFDLSFRRLMDAMSEAYKAGYLGENILGSSFSCDIRVMQGGGAYVCGEESSLYT 179
Query: 754 SIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
SIEG +G PR KPPFP GL+ PT V
Sbjct: 180 SIEGFKGYPRNKPPFPAVQGLYKAPTVV 207
>UniRef50_Q9ZBV8 Cluster: Putative respiratory chain oxidoreductase;
n=2; Streptomyces|Rep: Putative respiratory chain
oxidoreductase - Streptomyces coelicolor
Length = 646
Score = 190 bits (462), Expect = 5e-47
Identities = 94/183 (51%), Positives = 113/183 (61%)
Frame = +1
Query: 283 ARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNA 462
A G + + G ++ E+ +GL GRGGA FPTG KW D P YLV NA
Sbjct: 263 AHGGYTALRRAFALGPAAVIREVTDAGLVGRGGAAFPTGRKWQATAAQPD-HPHYLVCNA 321
Query: 463 DEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAY 642
DE EPGT KDR +M DP+ LVE IA A GA Y+Y+RGE+ + L AI +A
Sbjct: 322 DESEPGTFKDRVLMEGDPYALVEAMTIAAYATGAHRGYLYLRGEYPRALARLTHAIEQAR 381
Query: 643 QAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFG 822
GL+G + G GY FDI + RGAGAYICGEETAL SIEG++G PR KPPFP + GLFG
Sbjct: 382 TRGLLGDDVLGQGYAFDIEIRRGAGAYICGEETALFNSIEGRRGEPRSKPPFPVEKGLFG 441
Query: 823 CPT 831
PT
Sbjct: 442 KPT 444
>UniRef50_Q2AFM4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Bacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Halothermothrix orenii H 168
Length = 408
Score = 188 bits (458), Expect = 2e-46
Identities = 87/167 (52%), Positives = 113/167 (67%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ E+K SGLRGRGGAGFPTG+KW K G KY++ N DEGEPGT KDR ++ + P
Sbjct: 34 IIEELKKSGLRGRGGAGFPTGLKWELALKEKAGE-KYIICNGDEGEPGTFKDRYLLENSP 92
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
K++EG LI +GA YIYIRGE+ + + I EA + G++G GS Y FD+
Sbjct: 93 LKVLEGILIGAYTIGAHQGYIYIRGEYALPINIFRQVIKEAKKRGILGNRVMGSDYSFDL 152
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ +GAGAY+CG+ET+LI SIEGK+G R+KPP+P GLF PT V
Sbjct: 153 KLIKGAGAYVCGDETSLINSIEGKRGTSRIKPPYPTRQGLFNKPTVV 199
>UniRef50_Q3A639 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=1; Pelobacter
carbinolicus DSM 2380|Rep: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 571
Score = 188 bits (457), Expect = 2e-46
Identities = 87/177 (49%), Positives = 115/177 (64%)
Frame = +1
Query: 307 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTC 486
K + ++ ++NE SGLRGRGGAGFP G+KW F + KY++ NADEG+PG
Sbjct: 183 KALTEMSSEEVINEAIGSGLRGRGGAGFPIGLKWKFAAAEKNDI-KYILCNADEGDPGAF 241
Query: 487 KDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKN 666
DR +M DPH ++EG +I +A+GA YIY R E+ L AI +A L+G+N
Sbjct: 242 MDRNVMESDPHSIIEGLIIGAKAIGAHQGYIYCRAEYPLAIETLNKAINQARALDLLGEN 301
Query: 667 SCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
G+G+ FDI V+ GAGA++CGEETAL+ SIEGK+G PR KPPFP GLF PT +
Sbjct: 302 ILGTGFSFDISVYEGAGAFVCGEETALMRSIEGKRGNPRPKPPFPAKAGLFEKPTVL 358
>UniRef50_Q2LYA9 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding subunit; n=3; cellular organisms|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding subunit -
Syntrophus aciditrophicus (strain SB)
Length = 637
Score = 186 bits (452), Expect = 8e-46
Identities = 87/187 (46%), Positives = 124/187 (66%), Gaps = 1/187 (0%)
Frame = +1
Query: 280 LARGDWY-LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 456
+ARG + L K + + ++ E+KTSGLRGRGG GFPTG KW + ++G KY++
Sbjct: 175 IARGGYTALHKALTTMSPEDVILEVKTSGLRGRGGGGFPTGTKWESCRR-AEGEIKYVIC 233
Query: 457 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
N DEG+PG DR +M DPH ++EG +I A+GA YIY+R E+ +NLQ AI +
Sbjct: 234 NGDEGDPGAYMDRSLMEGDPHSVLEGMIIGAYAIGAHEGYIYVRNEYPLAVANLQHAIGQ 293
Query: 637 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGL 816
A +AGL+GKN G+G++FDI + +GAGA++CGE TAL+ S+EGK G PR K + GL
Sbjct: 294 AREAGLLGKNILGTGFEFDIKIAKGAGAFVCGESTALMASLEGKAGEPRAKYIHTVEQGL 353
Query: 817 FGCPTTV 837
+ P+ +
Sbjct: 354 WNRPSNL 360
>UniRef50_Q746S7 Cluster: NADH dehydrogenase I, F subunit; n=7;
Deltaproteobacteria|Rep: NADH dehydrogenase I, F subunit
- Geobacter sulfurreducens
Length = 423
Score = 185 bits (450), Expect = 1e-45
Identities = 87/160 (54%), Positives = 113/160 (70%)
Frame = +1
Query: 358 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 537
+ LRGRGGAGFPTG KWSF+ + G P+YL+ N DE EPGT KDR ++ +P+ LVEG
Sbjct: 48 ANLRGRGGAGFPTGKKWSFVPRDIPG-PRYLICNCDEMEPGTYKDRILLEANPYSLVEGM 106
Query: 538 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAG 717
+A A+G A+I+IR + A N + AIAEA +AGL+GKN GSG+ D+ VH+ AG
Sbjct: 107 TLAAYAIGVAHAFIFIRRGYEEAAENCRRAIAEAKEAGLLGKNILGSGFSLDLDVHQSAG 166
Query: 718 AYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
YICGEETAL+ ++EG++ PR KPPFP GL+G PT V
Sbjct: 167 RYICGEETALMNALEGRRANPRSKPPFPAVKGLWGRPTVV 206
>UniRef50_Q7WMR8 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=107; Bacteria|Rep: NAD-dependent formate
dehydrogenase beta subunit - Bordetella bronchiseptica
(Alcaligenes bronchisepticus)
Length = 526
Score = 184 bits (449), Expect = 2e-45
Identities = 90/174 (51%), Positives = 115/174 (66%)
Frame = +1
Query: 316 LLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDR 495
L + IV+E+ SGLRGRGGA FPTG+KW + R KY+V NADEG+ GT DR
Sbjct: 140 LAMSAEQIVDEVSASGLRGRGGAAFPTGIKWKTVLTTPAPR-KYIVCNADEGDSGTFADR 198
Query: 496 EIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG 675
+M DP+ L+EG IAG A+GA YIY+R E+ + + L+ AIA A + G +G + G
Sbjct: 199 LLMEGDPYSLIEGMTIAGLAVGATYGYIYVRSEYPHAIATLRQAIARAREVGWLGDDIHG 258
Query: 676 SGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
SG FD+ V GAGAYICGEET+L+ S+EGK+G R KPP P GLFG PT +
Sbjct: 259 SGQRFDLEVREGAGAYICGEETSLLESLEGKRGVVRAKPPLPAIAGLFGLPTVI 312
>UniRef50_Q8ABI5 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=91; cellular organisms|Rep: NADH:ubiquinone
oxidoreductase subunit - Bacteroides thetaiotaomicron
Length = 635
Score = 184 bits (448), Expect = 2e-45
Identities = 89/187 (47%), Positives = 121/187 (64%), Gaps = 1/187 (0%)
Frame = +1
Query: 280 LARGDWYLTKEILL-KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV 456
+AR ++ + LL K +++ +K SGLRGRGG GFPTG+KW F +K KY+V
Sbjct: 173 IAREGYFALADCLLNKQPADVIDIIKRSGLRGRGGGGFPTGLKWEFASKQVSN-VKYVVC 231
Query: 457 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
NADEG+PG DR IM DPH +VE I G ++G+ +YIR E+ + L+ AI +
Sbjct: 232 NADEGDPGAFMDRSIMEGDPHSIVEAMCICGYSIGSSKGLVYIRAEYPLAINRLKKAIEQ 291
Query: 637 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGL 816
A + GL+G + G+ + FDI + GAGA++CGEETALI S+EGK+G P LKPPFP + G
Sbjct: 292 AREYGLLGDHILGTDFSFDIEIRYGAGAFVCGEETALIHSMEGKRGEPTLKPPFPAESGY 351
Query: 817 FGCPTTV 837
G PT V
Sbjct: 352 LGKPTNV 358
>UniRef50_P74024 Cluster: Hydrogenase subunit; n=13; Bacteria|Rep:
Hydrogenase subunit - Synechocystis sp. (strain PCC
6803)
Length = 533
Score = 180 bits (438), Expect = 4e-44
Identities = 82/167 (49%), Positives = 112/167 (67%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ EM SGLRGRGG G+PTG+KW+ + K G+ KY++ NADEG+PG DR ++ DP
Sbjct: 160 VIVEMNKSGLRGRGGGGYPTGLKWATVAK-MPGQQKYVICNADEGDPGAFMDRSVLESDP 218
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
H+++EG IA A+GA YIY+R E+ LQ AI +A + GL+G S DF I
Sbjct: 219 HRILEGMAIAAYAVGANHGYIYVRAEYPLAIQRLQKAIQQAKRYGLMGTQIFDSPIDFKI 278
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ GAGA++CGEETALI S+EGK+G PR +PP+P GL+ PT +
Sbjct: 279 DIRVGAGAFVCGEETALIASVEGKRGTPRPRPPYPAQSGLWQSPTLI 325
>UniRef50_A6GJI0 Cluster: Putative NADH dehydrogenase I chain F;
n=1; Plesiocystis pacifica SIR-1|Rep: Putative NADH
dehydrogenase I chain F - Plesiocystis pacifica SIR-1
Length = 503
Score = 180 bits (438), Expect = 4e-44
Identities = 91/171 (53%), Positives = 117/171 (68%), Gaps = 1/171 (0%)
Frame = +1
Query: 322 KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 501
+G DWI+ ++KTSGL+GRGGAGFP +KW + ++ +Y+VVNADEGEPGT KDREI
Sbjct: 143 EGPDWIIEQLKTSGLQGRGGAGFPAHIKWHAVRTQAE-LTRYVVVNADEGEPGTFKDREI 201
Query: 502 MRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSG 681
M PH+++EG IA GA A+IY+RGEF + L+ AIAEA G
Sbjct: 202 MLRRPHRMIEGMAIAAWVAGAAKAFIYVRGEFRDCIRALEAAIAEA-----------GER 250
Query: 682 YDF-DIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPT 831
D+ DI + G GAYICGEETAL+ +IEGK+G PRLKPP+P + GL+G PT
Sbjct: 251 LDWLDIEIVEGHGAYICGEETALLEAIEGKRGMPRLKPPYPTEKGLWGKPT 301
>UniRef50_A5FSK8 Cluster: NADH dehydrogenase; n=3;
Dehalococcoides|Rep: NADH dehydrogenase -
Dehalococcoides sp. BAV1
Length = 417
Score = 180 bits (438), Expect = 4e-44
Identities = 87/186 (46%), Positives = 116/186 (62%)
Frame = +1
Query: 280 LARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVN 459
LA G + K+ L + ++ E+K S L GRGGA FPTG+KW K PKY+V N
Sbjct: 23 LADGGYQALKKALSMTPEEVIAEVKRSKLVGRGGAAFPTGLKWELTRKEK-ANPKYIVCN 81
Query: 460 ADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 639
A EGEPGT KDR I+++DPH ++EG +IA A+G +I+ R + E Q AI +A
Sbjct: 82 ASEGEPGTFKDRLILKNDPHMVLEGFIIAAYAVGTSQGFIHAREVYTQEIELFQKAIDQA 141
Query: 640 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLF 819
+ G +G+N GS + DI ++ AGAYICGEETAL S+EG +G P +PP+P VGL
Sbjct: 142 TERGFLGQNIMGSNFSLDIQFYKSAGAYICGEETALFESLEGHRGIPATRPPYPVQVGLM 201
Query: 820 GCPTTV 837
PTTV
Sbjct: 202 DKPTTV 207
>UniRef50_A3ETZ6 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 627
Score = 179 bits (436), Expect = 7e-44
Identities = 100/209 (47%), Positives = 126/209 (60%), Gaps = 2/209 (0%)
Frame = +1
Query: 211 PLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDW--IVNEMKTSGLRGRGGA 384
PLA+ VFT L E R Y E LLK D +++ SG+ GRGG
Sbjct: 174 PLANEPVVFTGLRSG-ETRYLERYREDHGYRALEGLLKTGDAEAAFEQIRLSGVAGRGGG 232
Query: 385 GFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA 564
FP K + K + P+YLV NADEGEPGT KDR IM DPH L+EG IA R +GA
Sbjct: 233 AFPMYRKLDAVRK--NPPPRYLVCNADEGEPGTFKDRYIMERDPHSLIEGMAIAARIIGA 290
Query: 565 QAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETA 744
+ +IY+R E+ + L+ AIAEA AGL+G GS + F + ++RGAGAYICGEET+
Sbjct: 291 EEGFIYLRSEYPHSFHILEKAIAEARSAGLLGPRILGSDFSFRLRLYRGAGAYICGEETS 350
Query: 745 LIXSIEGKQGXPRLKPPFPXDVGLFGCPT 831
LI S+EGK+ PR KPP +VGL+G PT
Sbjct: 351 LINSLEGKRAYPRNKPPHLSEVGLWGKPT 379
>UniRef50_Q6MDR1 Cluster: Probable NADH-ubiquinone oxidoreductase
chain F; n=1; Candidatus Protochlamydia amoebophila
UWE25|Rep: Probable NADH-ubiquinone oxidoreductase chain
F - Protochlamydia amoebophila (strain UWE25)
Length = 432
Score = 177 bits (430), Expect = 4e-43
Identities = 89/179 (49%), Positives = 115/179 (64%)
Frame = +1
Query: 301 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 480
L K I +D ++ +K S LRGRGG GF TG+KWSF+ K KYLV N DE EPG
Sbjct: 31 LKKAISSISSDQLIEMVKQSWLRGRGGGGFQTGLKWSFVPKDCQ-ISKYLVCNCDESEPG 89
Query: 481 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 660
T KDR I+ +DPH+L+EG ++A A+GA+ A+IY RGEF+ L++AI EA + G +
Sbjct: 90 TFKDRYIIENDPHQLIEGIILACYAIGAKQAFIYCRGEFFEGNKKLRLAIQEAKKRGYLE 149
Query: 661 KNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ + I VH GAGAYI GEETA + S+EG + PRLKPPFP GL+ PT V
Sbjct: 150 APLGEANFSVSIIVHPGAGAYIAGEETAQLNSLEGYRATPRLKPPFPAVSGLYEKPTVV 208
>UniRef50_Q835I8 Cluster: NAD-dependent formate dehydrogenase, beta
subunit, putative; n=1; Enterococcus faecalis|Rep:
NAD-dependent formate dehydrogenase, beta subunit,
putative - Enterococcus faecalis (Streptococcus
faecalis)
Length = 417
Score = 175 bits (427), Expect = 9e-43
Identities = 85/168 (50%), Positives = 112/168 (66%), Gaps = 1/168 (0%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+NE+ + LRGRGGA +P G KW + + G KY+V NADEGEPGT KD+ ++ DP
Sbjct: 30 ILNELDIAHLRGRGGAAYPLGKKWRHLYH-AKGTTKYIVCNADEGEPGTFKDKVLLSEDP 88
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDFD 693
++EG +IAG A+A YIY+RGE+ Q A+ A QAG +G+N G G+++D
Sbjct: 89 LSVIEGMIIAGYLFSAKAGYIYMRGEYRRIQKTFQEALDNARQAGFLGENILGIEGFNYD 148
Query: 694 IFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
I + GAGAYICGE +AL+ SIEGK G PR+KPP DVGL+ PT V
Sbjct: 149 ITIISGAGAYICGENSALLNSIEGKTGRPRVKPPHLADVGLYLQPTLV 196
>UniRef50_Q6AQG1 Cluster: Probable NADP-reducing hydrogenase, 51 kDa
subunit; n=1; Desulfotalea psychrophila|Rep: Probable
NADP-reducing hydrogenase, 51 kDa subunit - Desulfotalea
psychrophila
Length = 634
Score = 172 bits (418), Expect = 1e-41
Identities = 85/182 (46%), Positives = 114/182 (62%), Gaps = 2/182 (1%)
Frame = +1
Query: 292 DWYLTKE-ILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 468
D YL E L +G D ++ E+K S LRGRGG GFP KW K + G PKY+V NADE
Sbjct: 166 DGYLALEKSLQEGPDMVLTEIKKSALRGRGGGGFPAARKWEAGRKAT-GHPKYVVCNADE 224
Query: 469 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 648
G+PG DR ++ DPH ++EG IAG +G++ YIY+R E+ + LQ AI +A +
Sbjct: 225 GDPGAFMDRSVLEGDPHAVLEGMAIAGLTIGSEKGYIYVRAEYPLAIARLQNAIDQAKEK 284
Query: 649 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKP-PFPXDVGLFGC 825
L+G N G+ + FDI + +GAGA++CGE TAL SI+G +G P+ P P D GLF
Sbjct: 285 NLLGANILGTDFSFDIELFQGAGAFVCGESTALTQSIQGYRGMPKASPRPRTTDEGLFDK 344
Query: 826 PT 831
PT
Sbjct: 345 PT 346
>UniRef50_Q6N1Z2 Cluster: NADH-ubiquinone dehydrogenase chain F;
n=8; Alphaproteobacteria|Rep: NADH-ubiquinone
dehydrogenase chain F - Rhodopseudomonas palustris
Length = 428
Score = 171 bits (415), Expect = 2e-41
Identities = 87/170 (51%), Positives = 112/170 (65%), Gaps = 3/170 (1%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGR---PKYLVVNADEGEPGTCKDREIMR 507
I+ ++ +GLRGRGGAGFPT KW FM S+ +YL VN DE EPG+ KDR +M
Sbjct: 43 IIAMVEAAGLRGRGGAGFPTANKWRFMRTGSERAGPGARYLCVNGDETEPGSFKDRLLME 102
Query: 508 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 687
PH+L+EG IA A+GA I +R E+ A+ L AIAEA AGL+G++ GSG+D
Sbjct: 103 ALPHQLIEGATIAAYAIGATEVIILVRDEYRAAAAALSRAIAEAEAAGLLGRDILGSGFD 162
Query: 688 FDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ VH AG YI GEETALI +IEG++ PR +PP+P GL+G PTTV
Sbjct: 163 LTMRVHASAGRYIVGEETALIAAIEGERPVPRHRPPYPAVSGLWGRPTTV 212
>UniRef50_A6PMG7 Cluster: NADH dehydrogenase (Quinone) precursor;
n=1; Victivallis vadensis ATCC BAA-548|Rep: NADH
dehydrogenase (Quinone) precursor - Victivallis vadensis
ATCC BAA-548
Length = 573
Score = 168 bits (408), Expect = 2e-40
Identities = 82/168 (48%), Positives = 111/168 (66%), Gaps = 1/168 (0%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMN-KPSDGRPKYLVVNADEGEPGTCKDREIMRHD 513
+V+E+K SGLRGRGG GFPTG KW F+ K +D K L+ NADEG+PG DR +M
Sbjct: 136 VVDEVKLSGLRGRGGGGFPTGNKWGFLAAKQAD--EKILICNADEGDPGAFMDRSLMESA 193
Query: 514 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFD 693
PH+++EG LIA A GA +IY R E+ +L++AIA+ Y+ L N G + +
Sbjct: 194 PHQVLEGMLIAAYATGATKLFIYCRAEYPMAIKHLKIAIAQIYEHKLNVVN----GRELE 249
Query: 694 IFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
I + GAGA++CGEETALI S+EG++G PR +PPFP D G G P+ +
Sbjct: 250 IIIKEGAGAFVCGEETALIASLEGQRGTPRFRPPFPTDKGWMGHPSMI 297
>UniRef50_Q4AEJ7 Cluster: Hydrogen dehydrogenase; n=1; Chlorobium
phaeobacteroides BS1|Rep: Hydrogen dehydrogenase -
Chlorobium phaeobacteroides BS1
Length = 497
Score = 167 bits (405), Expect = 4e-40
Identities = 88/196 (44%), Positives = 121/196 (61%), Gaps = 5/196 (2%)
Frame = +1
Query: 265 RLKGALARGDWYL---TKEILLK-GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSD 432
R KGAL D+ L KEIL + I++ + S +RGRGGAGFPTG+KW F ++ +
Sbjct: 116 RRKGALLNHDYPLFSVIKEILPNTSAEEIIDIVSESNIRGRGGAGFPTGLKWKFGSR-AK 174
Query: 433 GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEAS 612
G ++++ NADEGEPGT KDR ++ P + EG + AG A+GA +Y+R E+ +
Sbjct: 175 GERRFIICNADEGEPGTFKDRVLLTEYPEMVFEGMVTAGYAVGADLGLLYLRYEYKYMLN 234
Query: 613 NLQVAIAEAYQAGLIGKNSCG-SGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLK 789
L + + + +G N G +DFDI + GAGAYICGEE+ALI S+EGK+G PR K
Sbjct: 235 YLNGVLDDMRKNNYLGTNIGGVENFDFDIRIQLGAGAYICGEESALIESLEGKRGEPRDK 294
Query: 790 PPFPXDVGLFGCPTTV 837
PPFP + G PT V
Sbjct: 295 PPFPVEKGYLNLPTVV 310
>UniRef50_A5FXJ6 Cluster: NADH dehydrogenase; n=1; Acidiphilium
cryptum JF-5|Rep: NADH dehydrogenase - Acidiphilium
cryptum (strain JF-5)
Length = 434
Score = 166 bits (403), Expect = 7e-40
Identities = 85/211 (40%), Positives = 122/211 (57%), Gaps = 3/211 (1%)
Frame = +1
Query: 214 LADSDRVFTNLY--GRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAG 387
+A +DR T+ GR + G G + ++ + +V E+K + +RGRGGAG
Sbjct: 1 MAMADRPLTSYIQPGRQPLDIAGYERAGGYAAMRKAFGMSPESVVEEVKRAKVRGRGGAG 60
Query: 388 FPTGMKWSFMNKPSDG-RPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGA 564
FP G KW + +D R +YLV+NADE EPG+ KDR ++ PH ++EG +I A+ A
Sbjct: 61 FPAGRKWEGAPRGADAPRHRYLVINADEMEPGSFKDRLLLEAAPHLMIEGIIIGAFAVQA 120
Query: 565 QAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETA 744
+ AYI++RGE+ L A+AEA G +G + GSG+ I VH G YICGE +A
Sbjct: 121 ETAYIFVRGEYVLAMERLSRAVAEAEARGYLGADILGSGFSLTIHVHGSGGRYICGEASA 180
Query: 745 LIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
L ++EGK+ PR +PP GL+G PT V
Sbjct: 181 LFSALEGKRAVPRTRPPRSTTSGLWGKPTVV 211
>UniRef50_A0NMW4 Cluster: NADH:ubiquinone oxidoreductase,
NADH-binding (51 kD) subunit; n=2; Proteobacteria|Rep:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Stappia aggregata IAM 12614
Length = 626
Score = 165 bits (401), Expect = 1e-39
Identities = 85/169 (50%), Positives = 108/169 (63%), Gaps = 2/169 (1%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV-NADEGEPGTCKDREIMRHD 513
I++ ++ SGLRG GGAGF TG KW F S+ K+ V+ NADEGEPGT KDR ++
Sbjct: 228 IISAIEESGLRGCGGAGFTTGRKWRFA--ASERAEKHFVICNADEGEPGTFKDRVLLTER 285
Query: 514 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDF 690
PH L+EG IA RA+GA+ +Y+RGE+ L + E GL+GK+ G G+DF
Sbjct: 286 PHLLIEGMTIAARAVGAREGILYLRGEYVYLRELLLQVLEERRWRGLLGKDILGVKGFDF 345
Query: 691 DIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
DI + GAGAYICGEE ALI S EG G P+ +PPFP + G G PT V
Sbjct: 346 DIRLQLGAGAYICGEEGALISSCEGLPGEPKTRPPFPVNRGYLGYPTVV 394
>UniRef50_Q47HE6 Cluster: NADH dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit; n=1; Dechloromonas aromatica RCB|Rep: NADH
dehydrogenase (Ubiquinone), 24 kDa
subunit:Respiratory-chain NADH dehydrogenase domain, 51
kDa subunit - Dechloromonas aromatica (strain RCB)
Length = 632
Score = 164 bits (399), Expect = 2e-39
Identities = 81/169 (47%), Positives = 110/169 (65%), Gaps = 3/169 (1%)
Frame = +1
Query: 340 VNEMKTSGLRGRGGAGFPTGMKW-SFMNKP-SDGRPKYLVVNADEGEPGTCKDREIMRHD 513
++E+K + LRGRGGAGF TG+KW + N P G + +V NADEGEPGT KDR ++ +
Sbjct: 230 LDEIKRANLRGRGGAGFTTGLKWEACRNAPLKAGAQRIVVCNADEGEPGTFKDRVLLSRN 289
Query: 514 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDF 690
P + EG +A A+GA ++Y+RGE+ +L +A + L+GK+ G G DF
Sbjct: 290 PDLVFEGMTVAAYAVGATRGFVYLRGEYRYMLDHLNAVLAHRRREKLLGKDILGLPGADF 349
Query: 691 DIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
DI +H GAGAY+CGEE+ALI S+EGK+G PR +PPFP G PT V
Sbjct: 350 DIEIHVGAGAYVCGEESALIESLEGKRGTPRNRPPFPVTNGYLDQPTIV 398
>UniRef50_Q7XZ61 Cluster: NADH dehydrogenase; n=1; Griffithsia
japonica|Rep: NADH dehydrogenase - Griffithsia japonica
(Red alga)
Length = 170
Score = 162 bits (393), Expect = 1e-38
Identities = 73/117 (62%), Positives = 91/117 (77%), Gaps = 2/117 (1%)
Frame = +1
Query: 205 YGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGA 384
+G L+D DR+FTNLY +WRLKGA+ RGDW++TK+++ G WI++E+K R GA
Sbjct: 54 HGGLSDKDRIFTNLYRDGDWRLKGAMKRGDWHMTKDLVQMGRSWILSEIKAVRPARRAGA 113
Query: 385 -GFPTGMKWSFMNKPS-DGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 549
GFP+G+K+SFM S DGRP YLVVNADE EPGTCKDREI+R DPHKLVEGCL+ G
Sbjct: 114 PGFPSGLKYSFMPDGSPDGRPNYLVVNADESEPGTCKDREILRSDPHKLVEGCLLVG 170
>UniRef50_A1WBG0 Cluster: NADH dehydrogenase (Quinone) precursor;
n=6; Proteobacteria|Rep: NADH dehydrogenase (Quinone)
precursor - Acidovorax sp. (strain JS42)
Length = 640
Score = 160 bits (389), Expect = 4e-38
Identities = 84/181 (46%), Positives = 113/181 (62%), Gaps = 3/181 (1%)
Frame = +1
Query: 298 YLTKEILLKG---TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADE 468
Y T L+ G + ++ M+ SGLRG GGAGFP G KW + P+ + VN DE
Sbjct: 241 YQTAAALVNGEMDAEAVLAAMEDSGLRGLGGAGFPAGRKWRIVR--DQPAPRLMAVNIDE 298
Query: 469 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 648
GEPGT KDR + DPH+ +EG LIA + +G +A YIY+R E++ + LQ A+ E
Sbjct: 299 GEPGTFKDRTYLERDPHRFLEGVLIAAQVVGTEAVYIYLRDEYHGCRALLQSALEE---- 354
Query: 649 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCP 828
L ++ C + I + RGAGAYICGEE+A+I SIEGK+G PR++PP+ VGLFG P
Sbjct: 355 -LRAESPCPLPH---IELRRGAGAYICGEESAMIESIEGKRGEPRMRPPYIAQVGLFGRP 410
Query: 829 T 831
T
Sbjct: 411 T 411
>UniRef50_A0RMD3 Cluster: NADH-quinone oxidoreductase chain f; n=1;
Campylobacter fetus subsp. fetus 82-40|Rep: NADH-quinone
oxidoreductase chain f - Campylobacter fetus subsp.
fetus (strain 82-40)
Length = 406
Score = 160 bits (388), Expect = 5e-38
Identities = 90/196 (45%), Positives = 118/196 (60%), Gaps = 1/196 (0%)
Frame = +1
Query: 253 RHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSD 432
++ +++ A A G + + IL + IV + SGLRG+GG G G KW M
Sbjct: 11 KNGYKIDVAKANGAYLNLENILKMDRNSIVEAVDKSGLRGKGGGGGSCGTKWKNMLAWES 70
Query: 433 GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEAS 612
+ +YLVVN DE EPGTCKD+ I+ DPH L+EG +I+ A+GA+ AY+YIRGE+ E
Sbjct: 71 DK-RYLVVNGDESEPGTCKDKYILNLDPHLLIEGIIISSYALGAKRAYVYIRGEYEREFI 129
Query: 613 NLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKP 792
L AI EA N G D +I V++GAGAYICGE+TAL+ SIEGK+G PRLKP
Sbjct: 130 TLTNAIKEA-------ANELG---DLEIIVYKGAGAYICGEKTALLESIEGKRGHPRLKP 179
Query: 793 PFPXDVG-LFGCPTTV 837
+ LFGC V
Sbjct: 180 HNKAEPDFLFGCACVV 195
>UniRef50_Q1V283 Cluster: NAD-dependent formate dehydrogenase beta
subunit; n=2; Candidatus Pelagibacter ubique|Rep:
NAD-dependent formate dehydrogenase beta subunit -
Candidatus Pelagibacter ubique HTCC1002
Length = 552
Score = 157 bits (382), Expect = 2e-37
Identities = 80/206 (38%), Positives = 116/206 (56%), Gaps = 2/206 (0%)
Frame = +1
Query: 226 DRVFTNLYGRHEWRLKGALARGDWYLT--KEILLKGTDWIVNEMKTSGLRGRGGAGFPTG 399
++ F+ Y + + L+ D + K+ + I + S L GRGGAGFPTG
Sbjct: 140 EKFFSKSYASTSFLMDDKLSNLDQFKEQLKKFIATDKQEITKSLLDSNLTGRGGAGFPTG 199
Query: 400 MKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYI 579
MKW F K + KY++ NADEG+ G DR ++ P K++ G +I G +G+ +
Sbjct: 200 MKWDFCRK-APSEKKYVICNADEGDSGAFSDRYLLEDQPLKVLFGMVICGYVIGSDEGVL 258
Query: 580 YIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSI 759
YIRGE+ + AI +AGL+G+N G+ + FD+ + G GAYICGEETALI SI
Sbjct: 259 YIRGEYPKSIEAINGAINSLKKAGLLGENILGTKFSFDLNICIGQGAYICGEETALIASI 318
Query: 760 EGKQGXPRLKPPFPXDVGLFGCPTTV 837
EG++ ++PPFP GL+ PT V
Sbjct: 319 EGRRAEVDVRPPFPVTEGLYKKPTVV 344
>UniRef50_Q603S6 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=9; Proteobacteria|Rep: NAD-reducing hydrogenase, alpha
subunit - Methylococcus capsulatus
Length = 610
Score = 156 bits (378), Expect = 8e-37
Identities = 85/204 (41%), Positives = 119/204 (58%), Gaps = 13/204 (6%)
Frame = +1
Query: 265 RLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFM--------- 417
RL G R L + + L + + E++TS LRGRGGAGF T KW F
Sbjct: 179 RLLGNPVRPGEALERTLALD-RETMFGEIETSQLRGRGGAGFNTAWKWRFCYEGPETAAV 237
Query: 418 ---NKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 588
+P+ G +Y+V NADEGEPGT KDR +++ ++ EG + +GA+ ++Y+R
Sbjct: 238 CPPGQPAAGIERYVVCNADEGEPGTFKDRVLLQSCADQVFEGMTVCAYLVGAKQGFLYLR 297
Query: 589 GEFYNEASNLQVAIAEAYQAGLIGKNSCG-SGYDFDIFVHRGAGAYICGEETALIXSIEG 765
GE+ L+ +A + GL+GK+ G G+DFDI + GAGAYICGEE+ALI S+EG
Sbjct: 298 GEYLYLHDQLEAVLAARRRHGLLGKSILGREGFDFDIEIRLGAGAYICGEESALIESLEG 357
Query: 766 KQGXPRLKPPFPXDVGLFGCPTTV 837
+G PR +PP+P G G PT V
Sbjct: 358 NRGVPRNRPPYPVTHGYLGKPTVV 381
>UniRef50_O94500 Cluster: Iron sulfur cluster assembly protein; n=1;
Schizosaccharomyces pombe|Rep: Iron sulfur cluster
assembly protein - Schizosaccharomyces pombe (Fission
yeast)
Length = 452
Score = 155 bits (375), Expect = 2e-36
Identities = 85/208 (40%), Positives = 124/208 (59%), Gaps = 5/208 (2%)
Frame = +1
Query: 229 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKW 408
R+F NL + R+ ALA G++ EIL I+ ++ S LRGRG GFPTG K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92
Query: 409 SFMNKPSD---GRPK--YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 573
+ K + GR + ++VNA E + G+ KDR ++RH+PHK++EG +IA RA+ A A
Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152
Query: 574 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIX 753
Y++IR ++Y E +Q I +AY L+GKN G+ ++ +H GAG+YI GEE+ALI
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQ 212
Query: 754 SIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
S++G+ P + GLFG PT V
Sbjct: 213 SLQGEFPVPDIPINNTITSGLFGLPTLV 240
>UniRef50_Q3ZXP7 Cluster: Hydrogenase subunit HymB; n=7;
Bacteria|Rep: Hydrogenase subunit HymB - Dehalococcoides
sp. (strain CBDB1)
Length = 640
Score = 154 bits (374), Expect = 2e-36
Identities = 76/179 (42%), Positives = 109/179 (60%)
Frame = +1
Query: 301 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 480
L K + + ++ E+ + LRGRGG GFP G KW + +D KY++VN DEG+PG
Sbjct: 163 LVKTLFHMTPESVLEEVDKANLRGRGGGGFPAGKKWRTTHDAADP-VKYVLVNCDEGDPG 221
Query: 481 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIG 660
DR IM +PH ++EG I A+GA+ YIY+R E+ NL A+ +A + GL+G
Sbjct: 222 AFMDRSIMEGNPHCVLEGLAIGAFAIGAKEGYIYVRAEYPLAVENLYAALRQAEEYGLLG 281
Query: 661 KNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
KN GSG+DF + VH GAGA++ GE +AL+ +IEG+ G PR K GL+ P+ +
Sbjct: 282 KNILGSGFDFVVKVHEGAGAFVSGESSALMTAIEGRVGEPRPKYIRTAIKGLWDKPSNL 340
>UniRef50_Q5P4U3 Cluster: Formate dehydrogenase, NAD(P) reducing,
beta subunit; n=41; Proteobacteria|Rep: Formate
dehydrogenase, NAD(P) reducing, beta subunit - Azoarcus
sp. (strain EbN1) (Aromatoleum aromaticum (strain EbN1))
Length = 585
Score = 145 bits (352), Expect = 1e-33
Identities = 76/167 (45%), Positives = 100/167 (59%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 510
D +V + +GLRG GGAGFP KW + + P+++ VN DEGEPGT KDR +
Sbjct: 217 DAVVAALDAAGLRGLGGAGFPAARKWRTV--AAQPAPRFMAVNIDEGEPGTFKDRHYLET 274
Query: 511 DPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDF 690
DPH+ +EG LIA +G +IYIR E+ L+ +AE S
Sbjct: 275 DPHRFIEGMLIAAHVVGIDGIWIYIRDEY----PALRRLLAEELDRVRAAWPDVPS---- 326
Query: 691 DIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPT 831
I + RGAGAY+CGEE+A+I SIEGK+G PRL+PP+ +VGLFG PT
Sbjct: 327 -IEIRRGAGAYVCGEESAMIESIEGKRGMPRLRPPYVAEVGLFGRPT 372
>UniRef50_A3EW61 Cluster: NADH ubiquinone oxidoreductase; n=1;
Leptospirillum sp. Group II UBA|Rep: NADH ubiquinone
oxidoreductase - Leptospirillum sp. Group II UBA
Length = 453
Score = 144 bits (350), Expect = 2e-33
Identities = 71/167 (42%), Positives = 103/167 (61%), Gaps = 1/167 (0%)
Frame = +1
Query: 340 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 519
+ E+K +GLRGRGG+GFPT +KW + R KY+V N EGEPG+ KD ++ +PH
Sbjct: 57 IEELKEAGLRGRGGSGFPTAIKWEKVAHHRI-REKYVVANGSEGEPGSHKDHFLIETNPH 115
Query: 520 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIF 699
+++EG +IA A+ A+ A ++++ F L+ A EA + G +G GS D+
Sbjct: 116 QILEGMIIASFAVRARKAILFVKDSFPRGIDALKKARDEAREEGFLGDRILGSELSLDLE 175
Query: 700 VHRGAGAYICGEETALIXSIEGKQGXPRLKPP-FPXDVGLFGCPTTV 837
+ G AYI GEETAL+ ++EG+ PR KPP +P D GL+ CPT V
Sbjct: 176 IFVGPSAYIAGEETALLEALEGRLPKPRPKPPGYPTDRGLYNCPTVV 222
>UniRef50_A1SU84 Cluster: Hydrogenase, NADP-reducing subunit C; n=1;
Psychromonas ingrahamii 37|Rep: Hydrogenase,
NADP-reducing subunit C - Psychromonas ingrahamii
(strain 37)
Length = 588
Score = 142 bits (345), Expect = 8e-33
Identities = 71/164 (43%), Positives = 96/164 (58%)
Frame = +1
Query: 346 EMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKL 525
E+ SGLRG GGAGF T KW SD +Y+V NADEGEPGT KDR ++ L
Sbjct: 203 EIDKSGLRGCGGAGFKTAEKWKSCLL-SDDNQRYVVCNADEGEPGTFKDRVLLNSYADLL 261
Query: 526 VEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVH 705
+EG + +GAQ +IY+R E+ + L + A L+G + S FDI +
Sbjct: 262 IEGMTLCAYVIGAQKGFIYLRYEYQHLYKKLLETLQRRRAANLLGAHILNSELSFDIEIF 321
Query: 706 RGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
GAG+Y+CGEE+AL+ S+EG++ PR++PPFP G PT V
Sbjct: 322 MGAGSYVCGEESALLESLEGRRAIPRIRPPFPVTHGYLDKPTVV 365
>UniRef50_A0K164 Cluster: NADH dehydrogenase; n=2;
Actinomycetales|Rep: NADH dehydrogenase - Arthrobacter
sp. (strain FB24)
Length = 566
Score = 142 bits (343), Expect = 1e-32
Identities = 70/183 (38%), Positives = 113/183 (61%), Gaps = 2/183 (1%)
Frame = +1
Query: 295 WYLTKEILLKGT-DWIVNEMKTSGLRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADE 468
W + ++ T + I+ ++ + LRGRGGAGF KW + ++ P+ P+ +V N DE
Sbjct: 186 WSVWPDVAASATPEDILLRVEAAQLRGRGGAGFRAAAKWRAALDHPA---PRVVVANGDE 242
Query: 469 GEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQA 648
G+PG+ DR +M D H+++EG ++A A+GA +++R E+ A+ L+ A+ EA +A
Sbjct: 243 GDPGSYADRLLMEQDAHRVLEGLVLACFAVGATTGIVFVRSEYPLAAARLRNALHEARRA 302
Query: 649 GLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCP 828
G +G + GSG+ ++ V GAG+Y+ GEETAL+ + G +G R +PPFP + G G P
Sbjct: 303 GHLGPDIAGSGFSLEVRVAEGAGSYVSGEETALLNGLAGLRGVVRPRPPFPTERGFHGRP 362
Query: 829 TTV 837
T V
Sbjct: 363 TVV 365
>UniRef50_UPI0000384AE3 Cluster: COG1894: NADH:ubiquinone
oxidoreductase, NADH-binding (51 kD) subunit; n=1;
Magnetospirillum magnetotacticum MS-1|Rep: COG1894:
NADH:ubiquinone oxidoreductase, NADH-binding (51 kD)
subunit - Magnetospirillum magnetotacticum MS-1
Length = 514
Score = 140 bits (339), Expect = 4e-32
Identities = 75/170 (44%), Positives = 105/170 (61%), Gaps = 1/170 (0%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADEGEPGTCKDREIMR 507
D ++ E++ +GLRG GGAGFPT KW + +P P+ +VVNADEGEPGT KDR ++
Sbjct: 165 DEVLAELERAGLRGMGGAGFPTARKWRAVAARPG---PRLVVVNADEGEPGTFKDRWFLQ 221
Query: 508 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 687
+ +++EG LIA A+ A Y+Y+R E Y + L + A +
Sbjct: 222 TNAARVLEGALIAAWAVEADEVYLYLRDE-YADLHKLLTVLIRALPGSV----------- 269
Query: 688 FDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ + RGAGAY+CGEE+ALI S+EGK+G PR +PP+ +VGLFG PT V
Sbjct: 270 -PVHLRRGAGAYVCGEESALIESLEGKRGLPRQRPPYVAEVGLFGRPTVV 318
>UniRef50_A1HDX5 Cluster: NADH dehydrogenase; n=4; Ralstonia
pickettii|Rep: NADH dehydrogenase - Ralstonia pickettii
12J
Length = 525
Score = 138 bits (334), Expect = 2e-31
Identities = 72/167 (43%), Positives = 101/167 (60%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+VN + S LRGRGGA FP G+KW + KY+VVNADEG+PG DR ++ DP
Sbjct: 163 LVNMVAASRLRGRGGAAFPAGIKWQAVASAC-AETKYVVVNADEGDPGAFSDRFLLEEDP 221
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
+L+E IA A+GA+ YIYIR E+ + + A+ +A AG +G + ++
Sbjct: 222 FRLIEATAIAAHAVGARRGYIYIRKEYPDAVRVMSHALEQARVAGWLGPT-----LELEL 276
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
V G GAYICGEET+L+ ++EG++ R +PP + GLFG PT V
Sbjct: 277 VV--GQGAYICGEETSLLNALEGRRPEVRPRPPQISECGLFGAPTLV 321
>UniRef50_Q67JR5 Cluster: NADH dehydrogenase subunit; n=1;
Symbiobacterium thermophilum|Rep: NADH dehydrogenase
subunit - Symbiobacterium thermophilum
Length = 394
Score = 128 bits (310), Expect = 1e-28
Identities = 71/187 (37%), Positives = 110/187 (58%), Gaps = 2/187 (1%)
Frame = +1
Query: 283 ARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGF--PTGMKWSFMNKPSDGRPKYLVV 456
ARG + + +G+ W++ ++ +GLRGRGG+G P G KW + S +Y+V
Sbjct: 21 ARGGYAGLEAARTRGSGWVLEQVTRAGLRGRGGSGDGRPIGQKWQRV-AASRVPERYVVA 79
Query: 457 NADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
NA E + + KDR ++ PH+++EG LIA +A+GA+ AY+Y+RG+ + A+AE
Sbjct: 80 NAAESQAVSRKDRYLLARFPHRVLEGLLIAAQALGAREAYLYVRGDSPEALDGARDAVAE 139
Query: 637 AYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGL 816
A AGL+G S + V A + GEETA++ ++EG +G P+ KPP P ++GL
Sbjct: 140 AGAAGLLGGVS--------VTVQPSAPTAVSGEETAILDALEGLEGYPQPKPPRPEEIGL 191
Query: 817 FGCPTTV 837
G PT V
Sbjct: 192 RGRPTLV 198
>UniRef50_A7IMB3 Cluster: NADH dehydrogenase; n=3;
Proteobacteria|Rep: NADH dehydrogenase - Xanthobacter
sp. (strain Py2)
Length = 422
Score = 122 bits (294), Expect = 1e-26
Identities = 67/170 (39%), Positives = 93/170 (54%), Gaps = 1/170 (0%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMN-KPSDGRPKYLVVNADEGEPGTCKDREIMR 507
D I+ +K + LRG GGAGFPT KWS P D KY+V N +E EPGT KDR ++R
Sbjct: 45 DAIIETLKDADLRGMGGAGFPTWRKWSAAAASPCD--EKYVVCNGNEDEPGTFKDRHLLR 102
Query: 508 HDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYD 687
PH+++EG LIA A+ A Y+ ++ A+ E + L+ S G
Sbjct: 103 WTPHQVIEGALIAAVAVKANRVVFYVNPHQAEGIDQMRWAVDEWTASDLLASVSKVVGRP 162
Query: 688 FDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ V +G YI GEETA++ ++G PR KPPFP + G+ G PT +
Sbjct: 163 VTLTVAPSSGRYIGGEETAIVSWLDGGFPFPRRKPPFPFESGVGGLPTLI 212
>UniRef50_Q1PZQ6 Cluster: Similar to NADH dehydrogenase I chain F
(1st module) EC: 1.6.5.3; n=1; Candidatus Kuenenia
stuttgartiensis|Rep: Similar to NADH dehydrogenase I
chain F (1st module) EC: 1.6.5.3 - Candidatus Kuenenia
stuttgartiensis
Length = 675
Score = 116 bits (279), Expect = 7e-25
Identities = 66/166 (39%), Positives = 93/166 (56%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
IV E+ SGLRGRGGAGFPTG+KW + + + +Y+V NA EGEPGT KDR ++R +P
Sbjct: 263 IVTELLASGLRGRGGAGFPTGVKWRTLVRHTCPT-RYVVCNAAEGEPGTFKDRYLLRKNP 321
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
+ +EG LIA A+ A YI ++ F ++ AI+E GL+ +I
Sbjct: 322 YATIEGMLIAAHAVNAAGIYIALKRSFGPSIERVRQAISEMASKGLMD--------GIEI 373
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTT 834
+ G Y+ GEE AL+ +EG PR P ++GLF P +
Sbjct: 374 KIVEGPEEYLFGEEKALLNVVEGFPPMPREAYCPPYEIGLFATPNS 419
>UniRef50_A5X3H0 Cluster: HtxX; n=1; Xanthobacter flavus|Rep: HtxX -
Xanthobacter flavus
Length = 496
Score = 114 bits (274), Expect = 3e-24
Identities = 63/154 (40%), Positives = 87/154 (56%)
Frame = +1
Query: 370 GRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 549
GR G GFP G KW + + G P ++VN DEGE KDR I+ DPH ++E L+A
Sbjct: 158 GRAGVGFPVGEKWRQV-MAAGGTP-VVIVNGDEGELAIFKDRFILETDPHGVLEAALVAA 215
Query: 550 RAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYIC 729
R GA ++Y+R ++ + ++ A+ E AGL + G G + + R GA+IC
Sbjct: 216 RVTGADLVFLYVRDDYAPIHAIVRRALEEVAAAGL----AEGIGLE----LRRSGGAFIC 267
Query: 730 GEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPT 831
GEETALI S+EG+ P +PPFP G G PT
Sbjct: 268 GEETALIASLEGRAARPTERPPFPTTRGYLGRPT 301
>UniRef50_O96948 Cluster: Hydrogenase; n=14; Eukaryota|Rep:
Hydrogenase - Nyctotherus ovalis
Length = 1206
Score = 101 bits (242), Expect = 2e-20
Identities = 63/183 (34%), Positives = 94/183 (51%), Gaps = 5/183 (2%)
Frame = +1
Query: 304 TKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGT 483
TK+ + G + ++ E+ S L GRGGAGF TG KW K + KY+V NADEG P T
Sbjct: 832 TKKAVSMGPEKVIEEVFKSNLVGRGGAGFRTGKKWESAYK-TPASDKYVVCNADEGLPST 890
Query: 484 CKDREIMRHDPHK--LVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLI 657
KD ++ ++ + + G I + +GA+ ++Y+R E+ N L+ +I +
Sbjct: 891 YKDWCLLNNEAKRKEVFTGMGICAKTIGAKRCFMYLRYEYRNLVPALEQSIKDV------ 944
Query: 658 GKNSCGSGYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPP---FPXDVGLFGCP 828
+++C D + G G Y+ GEE A SIEG+ PR P FP GLF P
Sbjct: 945 -QSTCPELADLKYEIRLGGGPYVAGEENAQFESIEGRAPLPRKDRPGNIFPTMEGLFHKP 1003
Query: 829 TTV 837
T +
Sbjct: 1004 TVI 1006
>UniRef50_A3Q2V2 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=8; Mycobacterium|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Mycobacterium sp. (strain JLS)
Length = 433
Score = 91.9 bits (218), Expect = 2e-17
Identities = 55/169 (32%), Positives = 90/169 (53%), Gaps = 1/169 (0%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVV-NADEGEPGTCKDREIMRHD 513
+++E++ SGL GRGGA FP +K + R + + N +EGEP + KDR ++RH
Sbjct: 49 LLDEVELSGLLGRGGAAFPMAVKLRSVRDHGRTRGGAVAIANGEEGEPASIKDRWLLRHR 108
Query: 514 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFD 693
PH +++G +A R + A+ A +Y+ A +++ A+ + L G +
Sbjct: 109 PHLVLDGLRLAARVVEAERAIVYVSDP--ESARSVETALTQVDSTVLDGVSIS------V 160
Query: 694 IFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTVT 840
+ V G Y+ GEETA + +I+G P KPP P + G+ G PT V+
Sbjct: 161 VVVDPG---YVAGEETAAVRAIDGGPAKPTDKPPRPFEEGVGGLPTLVS 206
>UniRef50_Q51696 Cluster: Putative uncharacterized protein ORF2;
n=1; Brevundimonas diminuta|Rep: Putative
uncharacterized protein ORF2 - Brevundimonas diminuta
(Pseudomonas diminuta)
Length = 401
Score = 84.6 bits (200), Expect = 3e-15
Identities = 52/158 (32%), Positives = 76/158 (48%)
Frame = +1
Query: 364 LRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLI 543
L G+GGA FP+ K ++ + R KYLVVN E EPG+ KD ++ H P ++EG L
Sbjct: 48 LSGKGGANFPSARKMRLFHQQAAPR-KYLVVNGGEHEPGSAKDDWLLLHHPDTVIEGALC 106
Query: 544 AGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAY 723
A+GA + + NE VA A + G + + Y
Sbjct: 107 VAHALGATHILVAV-----NEGRAATVAAVREAAAAIAIAGRLFPGIEVVLV----PDEY 157
Query: 724 ICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
+ GEETAL+ ++ G+ P +PP+P + G G PT V
Sbjct: 158 VVGEETALLQAVAGQVAKPVRRPPYPIESGHQGMPTLV 195
>UniRef50_A1SQ39 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 67.3 bits (157), Expect = 5e-10
Identities = 48/156 (30%), Positives = 74/156 (47%)
Frame = +1
Query: 364 LRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLI 543
L GRGGA FP K + P+ R + LV N E EP + KDR +M PH +++G L
Sbjct: 50 LLGRGGAAFPVATK--LLAVPTGSRTQVLV-NGSESEPASRKDRTLMTLTPHLVLDGALA 106
Query: 544 AGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAY 723
RA+ + ++ I ++L+ A+ E + I + + + R AG +
Sbjct: 107 VARAL--RTRHVTIAVHDAAALASLRTALDERARDEPIHER---------VDLRRTAGRF 155
Query: 724 ICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPT 831
+ GE AL+ ++G P + P D GL G PT
Sbjct: 156 VSGEVRALLRGLDGGPAVPPSRRTLPSDSGLRGAPT 191
>UniRef50_Q9ACZ1 Cluster: Putative oxidoreductase; n=3;
Streptomyces|Rep: Putative oxidoreductase - Streptomyces
coelicolor
Length = 525
Score = 61.7 bits (143), Expect = 2e-08
Identities = 48/174 (27%), Positives = 79/174 (45%), Gaps = 2/174 (1%)
Frame = +1
Query: 325 GTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPS--DGRPKYLVVNADEGEPGTCKDRE 498
G + + + L+GRGGAGFP K + + + G +VVN E +P KD
Sbjct: 33 GGEQLAKLAEAINLKGRGGAGFPFHKKLRSVTEAAIKRGVRPVVVVNGSESDPSCRKDTV 92
Query: 499 IMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGS 678
++ PH +++G L+ A+GA+ + + E + +++ A+AE GL NS S
Sbjct: 93 LINRAPHLILDGALLVAEALGARTLVVGVTRE--STQRSMEAALAE---RGL--SNSRRS 145
Query: 679 GYDFDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTVT 840
V R + G +LI SI+G P + G+ G PT ++
Sbjct: 146 A--LRASVQRNPVRMVTGSAASLIRSIDGGPAIPPGRKVSASQSGVGGAPTLLS 197
>UniRef50_A5N6H2 Cluster: RnfC related NADH dehydrogenase; n=2;
Clostridium kluyveri DSM 555|Rep: RnfC related NADH
dehydrogenase - Clostridium kluyveri DSM 555
Length = 442
Score = 60.1 bits (139), Expect = 7e-08
Identities = 46/152 (30%), Positives = 77/152 (50%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ ++K +G+ G GGAGFPT +K +N + KY +VNA E EP D+ +MR+
Sbjct: 3 LLKKVKDAGIIGAGGAGFPTHVK---LNT----KVKYFIVNALECEPLLQSDKYLMRNHS 55
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
++V I G+++GA+ I ++ +YNE L +I + NS ++
Sbjct: 56 DEIVGATEIIGKSLGAEKIVIGLKNVYYNEIDALTNSIKKL--------NS-----SVEL 102
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKP 792
F++R Y G+E L+ + GK P P
Sbjct: 103 FLNR--SFYPAGDEQILVYEVTGKTIAPGAIP 132
>UniRef50_A1SNE6 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Nocardioides sp. JS614|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Nocardioides sp. (strain BAA-499 / JS614)
Length = 412
Score = 57.6 bits (133), Expect = 4e-07
Identities = 30/92 (32%), Positives = 51/92 (55%), Gaps = 1/92 (1%)
Frame = +1
Query: 364 LRGRGGAGFPTGMKW-SFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCL 540
+RGRGGA FP +K + ++ GR +VVN EGEP + KD + PH +++G +
Sbjct: 57 VRGRGGAAFPFEVKLRTAADRSRQGRRPVVVVNLSEGEPASAKDSALALTRPHLVLDGAV 116
Query: 541 IAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
A+GA+ ++ + E + ++ A+AE
Sbjct: 117 ATAYALGARELHVVVPQERPLVGTAIRAALAE 148
>UniRef50_Q2J9U3 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Frankia|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Frankia sp. (strain CcI3)
Length = 510
Score = 55.6 bits (128), Expect = 1e-06
Identities = 37/131 (28%), Positives = 65/131 (49%), Gaps = 1/131 (0%)
Frame = +1
Query: 448 LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 627
+V NA EGEP + KD ++ PH +++G +A A+GA A++Y++ + ++ A
Sbjct: 166 VVANAAEGEPESAKDVTLLTVAPHLVLDGLQLAAEAVGADDAFVYLKPG--PAVTAVRRA 223
Query: 628 IAEAYQAGLIGKNSCGSGYD-FDIFVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPX 804
+A+ A G+D F + + ++ GE +A+I ++EG PR
Sbjct: 224 LAQRRAA----------GWDRFTVQIREAPETFVAGEASAVIAALEGGAARPRAHWQPLA 273
Query: 805 DVGLFGCPTTV 837
+ G G PT V
Sbjct: 274 EAGFHGRPTLV 284
>UniRef50_A7G5W1 Cluster: NADH dehydrogenase family protein; n=4;
Clostridium botulinum A|Rep: NADH dehydrogenase family
protein - Clostridium botulinum (strain Hall / ATCC 3502
/ NCTC 13319 / Type A)
Length = 372
Score = 54.8 bits (126), Expect = 3e-06
Identities = 36/121 (29%), Positives = 61/121 (50%), Gaps = 1/121 (0%)
Frame = +1
Query: 271 KGALARGDWYLTKEIL-LKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKY 447
K + + D TKE + +K D +V+ + +G+ G GGAGFPT +K NK DG Y
Sbjct: 57 KEIIIKADETQTKEFVKIKKCDNLVDTVFEAGIVGAGGAGFPTHIKLKADNK--DG---Y 111
Query: 448 LVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 627
++ N E EP + +++ P ++ G A +A ++ YI I+ + L+ A
Sbjct: 112 IIANCVECEPALHHNMKVIEETPELIINGIKYAMKATNSKKGYIAIKSKHEKAVRVLEEA 171
Query: 628 I 630
+
Sbjct: 172 L 172
>UniRef50_Q73PG1 Cluster: Na(+)-translocating NADH-quinone
reductase, A subunit; n=1; Treponema denticola|Rep:
Na(+)-translocating NADH-quinone reductase, A subunit -
Treponema denticola
Length = 480
Score = 54.0 bits (124), Expect = 5e-06
Identities = 39/144 (27%), Positives = 67/144 (46%)
Frame = +1
Query: 340 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 519
+ ++ +G+ G GGA FPT +K ++ P D + +Y++ N E EP C D + D
Sbjct: 124 LKRVRDAGITGMGGASFPTHVK---LSPPPDAKIEYVIANGAECEPYLCTDAATIFSDSD 180
Query: 520 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIF 699
+V+G I R +GA+ I + + L+ AI++ I N +G +DI
Sbjct: 181 SIVDGLAITMRIVGAKQGIIALEDNKKDLVPVLEKAISK------IKANPIAAG-AYDIS 233
Query: 700 VHRGAGAYICGEETALIXSIEGKQ 771
V Y G E L ++ ++
Sbjct: 234 VQLCKTKYPQGGEKTLTDAVVNRE 257
>UniRef50_Q44SY7 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=5; Chlorobiaceae|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Chlorobium limicola DSM 245
Length = 441
Score = 54.0 bits (124), Expect = 5e-06
Identities = 41/121 (33%), Positives = 61/121 (50%), Gaps = 3/121 (2%)
Frame = +1
Query: 232 VFTNLYGRHEWRLKGA-LARGDWY-LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMK 405
VF G+ EW L+G DW L+KE +LK + SG+ G GGAGFP+G+K
Sbjct: 95 VFITPDGKDEW-LEGLNTPECDWKKLSKEEILK-------RITDSGIVGMGGAGFPSGVK 146
Query: 406 WSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC-LIAGRAMGAQAAYIY 582
++ P D +++N E EP D +M +P +++G +I G +AYI
Sbjct: 147 ---LSPPKDKTIDTIILNGAECEPFLTADHRVMVEEPEAIIKGLEIITSLFQGKVSAYIG 203
Query: 583 I 585
I
Sbjct: 204 I 204
>UniRef50_Q92CR5 Cluster: Lin1106 protein; n=13; Listeria|Rep:
Lin1106 protein - Listeria innocua
Length = 454
Score = 52.8 bits (121), Expect = 1e-05
Identities = 33/100 (33%), Positives = 54/100 (54%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ ++K +G+ G GGAGFPT K+S G +YL++NA E EP D +MR+
Sbjct: 6 ILEKIKDAGVVGCGGAGFPTHAKFS-------GEVEYLIINAAECEPLLKTDHFVMRNHA 58
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
+ ++ + +GA+ A I + + E + L+ AI E
Sbjct: 59 VETIKAIEMVKNQVGAEFAVIATKRYYTEEIAALRSAITE 98
>UniRef50_A1WT48 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Halorhodospira halophila SL1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 448
Score = 52.8 bits (121), Expect = 1e-05
Identities = 32/99 (32%), Positives = 51/99 (51%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+V ++ +G+ G+GGA FPT +K++ P LVVN E EP D +M
Sbjct: 131 LVEAIRDAGIVGQGGASFPTHLKFAV---PEGYTVDTLVVNGCECEPFLSADHRLMVEAT 187
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 633
+++G +A RA+GA A I + + + LQ A+A
Sbjct: 188 DSIIDGVRLAMRAVGAPEAVIGVEDNKPDAVAALQAAVA 226
>UniRef50_A0LLS5 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=3; Deltaproteobacteria|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Syntrophobacter fumaroxidans (strain DSM 10017 / MPOB)
Length = 440
Score = 52.4 bits (120), Expect = 1e-05
Identities = 49/160 (30%), Positives = 73/160 (45%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ +++ +GL G GGAGFPT +K ++ P R L++NA E EP D M P
Sbjct: 126 LLEKIRNAGLVGLGGAGFPTHLK---LSPPPGTRLDKLILNAAECEPYLNCDNRTMIEFP 182
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
H+++ G I R +G + +I I L A AE+ + D I
Sbjct: 183 HEILTGARIILRILGIKECHIGIENNKQEAIWVLSRAAAES------------TAPDCKI 230
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPPFPXDVGL 816
V+ Y G E LI +I G++ P P P DVG+
Sbjct: 231 SVNPLMVKYPQGSEKQLIQTITGRR-VP--YPGLPFDVGV 267
>UniRef50_Q67R12 Cluster: Na+-transporting NADH-quinone reductase
subunit 1; n=2; Firmicutes|Rep: Na+-transporting
NADH-quinone reductase subunit 1 - Symbiobacterium
thermophilum
Length = 446
Score = 51.2 bits (117), Expect = 3e-05
Identities = 31/100 (31%), Positives = 48/100 (48%)
Frame = +1
Query: 334 WIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHD 513
+I + ++ +GL G GGAGFP +K KP P +++N E EP D +M
Sbjct: 128 FIRDRVRQAGLVGMGGAGFPAAVK--LTPKPGT-EPDVVILNGAECEPAITSDHRLMLEH 184
Query: 514 PHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 633
P ++V G + RA GA+ I + + A L +A
Sbjct: 185 PEQVVLGLRLFMRASGAKRGIIAVEANKPDAAGKLSQLVA 224
>UniRef50_Q21I18 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Saccharophagus degradans 2-40|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Saccharophagus degradans (strain 2-40 / ATCC 43961 / DSM
17024)
Length = 745
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/77 (36%), Positives = 42/77 (54%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 510
D +V +++ +G+ G GGAGFPT +K +N S+ K L+ N E EP D +MR
Sbjct: 125 DRLVQKIRAAGIVGMGGAGFPTAIK---VNPKSNKHVKTLIFNGTECEPYITADDMLMRE 181
Query: 511 DPHKLVEGCLIAGRAMG 561
+V+G + R MG
Sbjct: 182 RADDIVKGVQLIARFMG 198
>UniRef50_Q0EPY6 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=3; Clostridia|Rep: Electron transport
complex, RnfABCDGE type, C subunit - Thermoanaerobacter
ethanolicus X514
Length = 443
Score = 51.2 bits (117), Expect = 3e-05
Identities = 28/81 (34%), Positives = 44/81 (54%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ ++ +G+ G GGAGFPT +K ++ PSD + ++VN E EP D +M P
Sbjct: 127 IIEIIREAGITGMGGAGFPTHVK---LSPPSDKKIDTILVNGAECEPYLTTDHRLMVEYP 183
Query: 517 HKLVEGCLIAGRAMGAQAAYI 579
K+V G +A+G + I
Sbjct: 184 EKIVFGLKAIMKAVGVERGII 204
>UniRef50_Q0AAG9 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Chromatiales|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Alkalilimnicola ehrlichei (strain MLHE-1)
Length = 515
Score = 50.8 bits (116), Expect = 4e-05
Identities = 32/96 (33%), Positives = 50/96 (52%), Gaps = 1/96 (1%)
Frame = +1
Query: 349 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHDPHKL 525
++ +G+ G GGA FPT +K +N PSD P L+ N E + TC DR +MR P ++
Sbjct: 132 VREAGIVGLGGAAFPTAIK---LNPPSDTLPDTLIANGVECDTHITCDDR-LMRERPEQI 187
Query: 526 VEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 633
++G A + I + G+ A L+ A+A
Sbjct: 188 LDGVATAADMLNVVRIRIAVEGDKPEAARALRDALA 223
>UniRef50_A7BY78 Cluster: Electron transport complex protein rnfC;
n=1; Beggiatoa sp. PS|Rep: Electron transport complex
protein rnfC - Beggiatoa sp. PS
Length = 446
Score = 50.0 bits (114), Expect = 7e-05
Identities = 27/80 (33%), Positives = 43/80 (53%)
Frame = +1
Query: 340 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 519
+N ++ +G+ G GGA FP+ +K++ P + K+LV+N E EP D +M P
Sbjct: 133 INHVQKAGIVGMGGAAFPSHVKYAL---PDGMQIKHLVINGAECEPYLTNDHRLMLERPD 189
Query: 520 KLVEGCLIAGRAMGAQAAYI 579
L+ G I + +GA A I
Sbjct: 190 TLLRGIEIVRQKLGATQATI 209
>UniRef50_UPI0000E87BCA Cluster: predicted NADH:ubiquinone
oxidoreductase, subunit RnfC; n=1; Methylophilales
bacterium HTCC2181|Rep: predicted NADH:ubiquinone
oxidoreductase, subunit RnfC - Methylophilales bacterium
HTCC2181
Length = 510
Score = 49.2 bits (112), Expect = 1e-04
Identities = 32/82 (39%), Positives = 45/82 (54%)
Frame = +1
Query: 340 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 519
+ ++ SG+ G GGA FPT +K + N+ K L+VNA E EP D +MR
Sbjct: 130 IKKISESGIVGLGGATFPTHLKLNNNNEV-----KTLIVNAAECEPYITCDDMLMREKSA 184
Query: 520 KLVEGCLIAGRAMGAQAAYIYI 585
+L+EG +A +GAQ A I I
Sbjct: 185 ELIEGIRLALHLLGAQNAIIGI 206
>UniRef50_Q896I5 Cluster: RnfC/nqrF; n=18; Clostridiales|Rep:
RnfC/nqrF - Clostridium tetani
Length = 449
Score = 49.2 bits (112), Expect = 1e-04
Identities = 27/67 (40%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHD 513
I+N +K +G+ G GGA FPT +K + P D + +Y+VVNA E EP TC R ++ H
Sbjct: 137 IINIVKEAGIVGMGGATFPTNVK---LTPPPDKKIEYIVVNAAECEPYLTCDHRMMLEHS 193
Query: 514 PHKLVEG 534
++++G
Sbjct: 194 -KEIIKG 199
>UniRef50_A6PV28 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Victivallis vadensis ATCC
BAA-548|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Victivallis vadensis ATCC
BAA-548
Length = 239
Score = 48.8 bits (111), Expect = 2e-04
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +1
Query: 358 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 537
+GL G GGA FPT +K ++ P D L++N E EP D +M P +++EG
Sbjct: 135 AGLVGMGGAAFPTHVK---LSPPPDKTIDTLILNGAECEPYLTADHRLMLEQPERVLEGA 191
Query: 538 LIAGRAMGAQAAYI 579
I+ + + + YI
Sbjct: 192 AISAKILNVKNVYI 205
>UniRef50_A1I872 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Candidatus Desulfococcus
oleovorans Hxd3|Rep: Electron transport complex,
RnfABCDGE type, C subunit - Candidatus Desulfococcus
oleovorans Hxd3
Length = 454
Score = 48.8 bits (111), Expect = 2e-04
Identities = 36/101 (35%), Positives = 52/101 (51%), Gaps = 2/101 (1%)
Frame = +1
Query: 289 GDWYLTKEILLKGTDWIVNE-MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNA 462
GDW K+ K ++E + +G+ G GGA FPT +K P+D RP L++N
Sbjct: 126 GDW--PKDAADKHDPKAISEAISAAGIVGLGGAAFPTHVK----IMPNDKRPVDALLING 179
Query: 463 DEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYI 585
E EP D IM ++ G L+AGRA+GA+ + I
Sbjct: 180 CECEPFLTPDYRIMVEAADAVICGALLAGRAVGAKQIVVGI 220
>UniRef50_A6TJY1 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Alkaliphilus
metalliredigens QYMF|Rep: Respiratory-chain NADH
dehydrogenase domain, 51 kDa subunit - Alkaliphilus
metalliredigens QYMF
Length = 448
Score = 48.4 bits (110), Expect = 2e-04
Identities = 33/98 (33%), Positives = 52/98 (53%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ ++ +G+ G GGAGFPT +K DG +YL+VNA E EP D+ I RH
Sbjct: 3 ILEKIFEAGVVGAGGAGFPTHIKL-------DGVAEYLLVNAVECEPLLETDKFITRHKS 55
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 630
++++ I G + A+ I ++ + E L+ AI
Sbjct: 56 EEIIKAMEIMGNHIQAKEMVIGLKKKNTKEIQALREAI 93
>UniRef50_Q9WY86 Cluster: Electron transport complex protein,
putative; n=5; Bacteria|Rep: Electron transport complex
protein, putative - Thermotoga maritima
Length = 451
Score = 47.6 bits (108), Expect = 4e-04
Identities = 28/95 (29%), Positives = 48/95 (50%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ +K +G+ G GGA FPT +K ++ P + + L+VN E EP D +M
Sbjct: 138 ILEIIKKAGIVGLGGAMFPTHVK---LSPPPEKKVDTLIVNGAECEPVLTIDHRLMLERA 194
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 621
+++G LI + +G Q A + + + NL+
Sbjct: 195 EDILQGILIMMKVLGVQKAVVGVESNKMDAYHNLK 229
>UniRef50_A4CB98 Cluster: Electron transport complex protein RnfC;
n=3; Alteromonadales|Rep: Electron transport complex
protein RnfC - Pseudoalteromonas tunicata D2
Length = 872
Score = 47.6 bits (108), Expect = 4e-04
Identities = 33/107 (30%), Positives = 52/107 (48%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+N+++++G+ G GGAGF T +K + K YL+VN E EP D +M+
Sbjct: 136 IINKIRSAGISGMGGAGFATYVKAQPLQKID-----YLIVNGVECEPYITSDDRLMQEHA 190
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLI 657
++EG LI + + I I + +Q A A+ Y LI
Sbjct: 191 TTIIEGSLILAHVLKPERILIGIEDNKPEAIAAMQAA-AKPYPHILI 236
>UniRef50_Q482U5 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Colwellia psychrerythraea 34H|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Colwellia psychrerythraea (strain 34H / ATCC BAA-681)
(Vibriopsychroerythus)
Length = 788
Score = 47.2 bits (107), Expect = 5e-04
Identities = 33/99 (33%), Positives = 47/99 (47%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
IV ++ +G+ G GGAGFPT +K S +KP K+L++N E EP D +M
Sbjct: 137 IVKKIANAGIAGMGGAGFPTHIKVS--SKPD---IKFLIINGAECEPYITADDLLMMEQS 191
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 633
+ +V+G I R + I I LQ A A
Sbjct: 192 NAIVDGIKILDRLLTPTVILIGIEANKPKAIKALQKATA 230
>UniRef50_A6NTM2 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 452
Score = 46.8 bits (106), Expect = 7e-04
Identities = 29/99 (29%), Positives = 51/99 (51%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+ +K +G+ G GGAGFPT +K S + + +VNA E EP D+ + R P
Sbjct: 3 LTEAVKAAGVVGAGGAGFPTHVKLS-------AKAECFLVNAAECEPLIETDKYLCRTFP 55
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 633
++V +GA+ I ++G++ E + L+ +I+
Sbjct: 56 DRIVAAAAAIAAHLGAKRTVIALKGKYKAEIAALEDSIS 94
>UniRef50_Q0PIB6 Cluster: Ethanolamine utilization Fe-S center
protein eut; n=1; Heliobacillus mobilis|Rep:
Ethanolamine utilization Fe-S center protein eut -
Heliobacillus mobilis
Length = 444
Score = 46.4 bits (105), Expect = 0.001
Identities = 29/87 (33%), Positives = 47/87 (54%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
IV +K +G+ G GGAGFPT +K MN +D ++ N E EP + +M +
Sbjct: 5 IVKAVKEAGVVGAGGAGFPTHIK---MNASAD----IIIANGAECEPLLRSHQHLMAAES 57
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEF 597
++V G + A GAQ +YI ++ ++
Sbjct: 58 DRVVLGLIAVMLATGAQKSYIGLKKKY 84
>UniRef50_Q8AA47 Cluster: Na+-transporting NADH:ubiquinone
oxidoreductase, Electron transport complex protein rnfC;
n=10; Bacteroidetes|Rep: Na+-transporting
NADH:ubiquinone oxidoreductase, Electron transport
complex protein rnfC - Bacteroides thetaiotaomicron
Length = 445
Score = 46.0 bits (104), Expect = 0.001
Identities = 35/118 (29%), Positives = 59/118 (50%)
Frame = +1
Query: 301 LTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG 480
L KE L + IV ++ +G+ G GGA FPT +K + P + + +++NA E EP
Sbjct: 115 LVKECELSSEE-IVKKIADAGIVGLGGACFPTQVK---LCPPPSFKAECVIINAVECEPY 170
Query: 481 TCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGL 654
D ++M +++ G I +A+ A+I I +A L +A +Y AG+
Sbjct: 171 LTADHQLMLEHAEEVMVGVSILMKAVKVNKAFIGIENN-KPDAIELMTKVASSY-AGI 226
>UniRef50_Q2SKU6 Cluster: Predicted NADH:ubiquinone oxidoreductase,
subunit RnfC; n=4; Proteobacteria|Rep: Predicted
NADH:ubiquinone oxidoreductase, subunit RnfC - Hahella
chejuensis (strain KCTC 2396)
Length = 821
Score = 45.6 bits (103), Expect = 0.002
Identities = 27/97 (27%), Positives = 47/97 (48%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ ++ G+ G GGAGFPT +K ++ P + + L++NA E EP D +MR
Sbjct: 127 LLERVRQGGIAGMGGAGFPTAIK---LHPPRNDKVNALILNAAECEPYITADDMLMRERA 183
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 627
+++ G I + + + I I + LQ A
Sbjct: 184 DEVIRGMEIMAQLLEPEECLIGIEDNKPEAIAALQQA 220
>UniRef50_Q1Q5X5 Cluster: Conserved hypothetical iron sulfur
protein; n=1; Candidatus Kuenenia stuttgartiensis|Rep:
Conserved hypothetical iron sulfur protein - Candidatus
Kuenenia stuttgartiensis
Length = 446
Score = 45.6 bits (103), Expect = 0.002
Identities = 25/77 (32%), Positives = 44/77 (57%)
Frame = +1
Query: 355 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 534
++G+ G GGA FPT +K + P D +V+N E EP D +MR++ ++++EG
Sbjct: 139 SAGIVGLGGATFPTHVK---LTPPKDKTIDTIVMNGAECEPYLTCDHYVMRNNANEVLEG 195
Query: 535 CLIAGRAMGAQAAYIYI 585
+ + +G + A+I I
Sbjct: 196 LRLVMKCIGCKKAHIGI 212
>UniRef50_A1AVH8 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; sulfur-oxidizing symbionts|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Ruthia magnifica subsp. Calyptogena magnifica
Length = 497
Score = 45.6 bits (103), Expect = 0.002
Identities = 27/86 (31%), Positives = 45/86 (52%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++ ++ SG+ G GGAGFPT +K + + L++N E EPG D +M+ P
Sbjct: 126 MIDCIQKSGIVGLGGAGFPTHVKLGKIKQCHT-----LIINGTECEPGVMCDNALMQFYP 180
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGE 594
+++ G I GA+ A I I +
Sbjct: 181 REIIRGVEILLYICGAERAIIAIEDD 206
>UniRef50_Q8RIJ6 Cluster: Nitrogen fixation iron-sulphur protein
RNFC; n=6; Bacteria|Rep: Nitrogen fixation iron-sulphur
protein RNFC - Fusobacterium nucleatum subsp. nucleatum
Length = 441
Score = 45.2 bits (102), Expect = 0.002
Identities = 25/83 (30%), Positives = 43/83 (51%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++ ++ G+ G GGA FPT +K +N P + + L++N E EP D +M +P
Sbjct: 129 LLDIIREKGIVGIGGATFPTHVK---LNPPPNTQLDSLILNGAECEPYLNSDNRLMLENP 185
Query: 517 HKLVEGCLIAGRAMGAQAAYIYI 585
+VEG I + + Y+ I
Sbjct: 186 KSIVEGIKIIKKILNVPNVYVGI 208
>UniRef50_Q31GU4 Cluster: NADH oxidoreductase, RnfABCDGE type, C
subunit; n=1; Thiomicrospira crunogena XCL-2|Rep: NADH
oxidoreductase, RnfABCDGE type, C subunit -
Thiomicrospira crunogena (strain XCL-2)
Length = 704
Score = 45.2 bits (102), Expect = 0.002
Identities = 26/69 (37%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Frame = +1
Query: 358 SGLRGRGGAGFPTGMKWSFMNKPSD-GRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 534
+G+ G GGAGFPT F PS G+ KYL++N E EP D +M+ +V+G
Sbjct: 159 AGIVGMGGAGFPT-----FAKIPSQPGQIKYLLINGAECEPFITCDDMLMQTRAEDIVQG 213
Query: 535 CLIAGRAMG 561
+I +++G
Sbjct: 214 AMIVAQSLG 222
>UniRef50_Q18V42 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=3; Peptococcaceae|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Desulfitobacterium hafniense (strain DCB-2)
Length = 451
Score = 45.2 bits (102), Expect = 0.002
Identities = 27/99 (27%), Positives = 53/99 (53%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ ++K +G+ G GGAGFPT +K + + + ++VN E EP D+++M
Sbjct: 5 LIEKIKKAGVVGAGGAGFPTHVK-------VNSKARTVLVNGAECEPLLRVDQQLMAGQA 57
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 633
K+V G + GA+ I ++ ++++ S L+ I+
Sbjct: 58 SKVVMGLELVMSVTGAKEGIISLKHKYHDAISALEKEIS 96
>UniRef50_Q0VP39 Cluster: Electron transport complex protein rnfC;
n=4; Proteobacteria|Rep: Electron transport complex
protein rnfC - Alcanivorax borkumensis (strain SK2 /
ATCC 700651 / DSM 11573)
Length = 991
Score = 45.2 bits (102), Expect = 0.002
Identities = 24/66 (36%), Positives = 38/66 (57%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+V+ ++ +G+ G GGAGFPT +K +N R + L++NA E EP D +MR
Sbjct: 156 LVDIIRHAGIAGMGGAGFPTSIK---VNLGDHQRVEQLIINAVECEPYITADDRLMRERA 212
Query: 517 HKLVEG 534
++V G
Sbjct: 213 EQIVTG 218
>UniRef50_Q603B2 Cluster: Electron transport complex, C subunit;
n=1; Methylococcus capsulatus|Rep: Electron transport
complex, C subunit - Methylococcus capsulatus
Length = 523
Score = 44.8 bits (101), Expect = 0.003
Identities = 25/79 (31%), Positives = 39/79 (49%)
Frame = +1
Query: 358 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 537
+G+ G GGA FPT +K P L++N E EP D ++RH P +++EG
Sbjct: 134 AGIVGLGGAAFPTAVK----TDPGHRAIDTLILNGAECEPYITCDDSLLRHFPREVLEGA 189
Query: 538 LIAGRAMGAQAAYIYIRGE 594
I R +G + + I +
Sbjct: 190 RILMRVLGVERCLLGIEDD 208
>UniRef50_A1WUZ0 Cluster: Electron transport complex, RnfABCDGE
type, C subunit precursor; n=10;
Gammaproteobacteria|Rep: Electron transport complex,
RnfABCDGE type, C subunit precursor - Halorhodospira
halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 681
Score = 44.4 bits (100), Expect = 0.004
Identities = 40/153 (26%), Positives = 66/153 (43%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ + +G+RG GGA FP+ +K + + LVVN E + D ++R
Sbjct: 315 LLRRIGEAGVRGMGGAAFPSALK---LADGARSGVDTLVVNGVECDTYLTCDETLLRMRA 371
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDI 696
+++G IA RA GA+ + ++ A+ + AI EA +A DI
Sbjct: 372 AAIIDGARIAARACGAERILVAVKNSAPEAAAAAEAAI-EASEA--------------DI 416
Query: 697 FVHRGAGAYICGEETALIXSIEGKQGXPRLKPP 795
V R G Y G E ++ G+ +PP
Sbjct: 417 QVVRVGGDYPAGNERHIVYPTTGRTVPAGARPP 449
>UniRef50_Q9KT88 Cluster: Electron transport complex protein rnfC;
n=82; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Vibrio cholerae
Length = 774
Score = 44.4 bits (100), Expect = 0.004
Identities = 28/93 (30%), Positives = 44/93 (47%)
Frame = +1
Query: 349 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 528
++ +G+ G GGAGFPT K + R + L++NA E EP D +MR H+++
Sbjct: 140 IRQAGISGMGGAGFPTAKKL----QSGLSRTEILIINAAECEPYITADDVLMRQYAHEII 195
Query: 529 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVA 627
+G I + + I I + LQ A
Sbjct: 196 QGIEIVEHILKPKLTIIGIEDNKPEAVAALQQA 228
>UniRef50_A6TUS7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=5; Clostridiales|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Alkaliphilus metalliredigens QYMF
Length = 445
Score = 44.0 bits (99), Expect = 0.005
Identities = 27/98 (27%), Positives = 53/98 (54%)
Frame = +1
Query: 343 NEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHK 522
+++K +G+ G GGAGFPT +K D + +++++N E EP D+++M + P +
Sbjct: 5 DQIKEAGVIGAGGAGFPTHVK-------LDAKAEFVLLNGAECEPLLRVDQQLMEYFPEE 57
Query: 523 LVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
+++G A + + + A I I+ + L+ I E
Sbjct: 58 VIKGLEKARQHVKGKKALIGIKEKHTKVIDKLERKIKE 95
>UniRef50_Q5V638 Cluster: Putative NADH dehydrogenase I, F subunit;
n=1; Haloarcula marismortui|Rep: Putative NADH
dehydrogenase I, F subunit - Haloarcula marismortui
(Halobacterium marismortui)
Length = 507
Score = 44.0 bits (99), Expect = 0.005
Identities = 42/160 (26%), Positives = 67/160 (41%), Gaps = 3/160 (1%)
Frame = +1
Query: 367 RGRGGAGF--PTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCL 540
RGRG A P W ++ +DG P +V NA++ D ++ P +++G
Sbjct: 155 RGRGDAAADEPVADTWETASE-TDGDP-VVVCNANDASDLPTGDDTLLSGAPMAVLDGIA 212
Query: 541 IAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGA 720
+ A A +Y+ + ++L+ AI A + G
Sbjct: 213 AVAEYVDAGDAVVYVNESQTDVQADLREAIDAAADTLPVVPQLVA-----------GPDE 261
Query: 721 YICGEETALIXSIEGKQGX-PRLKPPFPXDVGLFGCPTTV 837
+ GE TA + ++EG PRL+PP P GL+G PT V
Sbjct: 262 FRAGEPTAALEALEGADRIEPRLQPPSPAKRGLYGRPTVV 301
>UniRef50_Q1FMT5 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Clostridiales|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Clostridium phytofermentans ISDg
Length = 442
Score = 43.2 bits (97), Expect = 0.008
Identities = 29/99 (29%), Positives = 52/99 (52%)
Frame = +1
Query: 349 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 528
+K G+ G GGAGFPT K F NK +++N E EP R+++R ++++
Sbjct: 11 VKEYGICGAGGAGFPTYAK--FSNKVDT-----IILNCAECEPLLKLHRQLLRDRAYEVL 63
Query: 529 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQ 645
+ I ++GA+ A I ++ + N + ++ I AY+
Sbjct: 64 KAFSIIAESIGAKEAIIVVKPSYKNTIAAVEAEIG-AYK 101
>UniRef50_Q52716 Cluster: Electron transport complex protein rnfC;
n=4; Rhodobacter|Rep: Electron transport complex protein
rnfC - Rhodobacter capsulatus (Rhodopseudomonas
capsulata)
Length = 519
Score = 43.2 bits (97), Expect = 0.008
Identities = 27/84 (32%), Positives = 45/84 (53%), Gaps = 1/84 (1%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHD 513
I ++ +G+ G GGA FP+ +K +N + L++N E EP TC DR +MR
Sbjct: 138 IAAQVAAAGIVGMGGATFPSAVK---LNLRAKYDLTTLIINGAECEPYLTCDDR-LMRER 193
Query: 514 PHKLVEGCLIAGRAMGAQAAYIYI 585
++ +G I RA+G + ++ I
Sbjct: 194 AEEIADGIGIMARALGVKQVFVAI 217
>UniRef50_A6FIW1 Cluster: Electron transport complex protein RnfC;
n=1; Moritella sp. PE36|Rep: Electron transport complex
protein RnfC - Moritella sp. PE36
Length = 931
Score = 42.3 bits (95), Expect = 0.015
Identities = 30/102 (29%), Positives = 48/102 (47%), Gaps = 1/102 (0%)
Frame = +1
Query: 328 TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPGTCKDREIM 504
T + + +G+ G GGAGFPT +K +D +P ++L++NA E EP D +M
Sbjct: 133 TSELQQHISQAGVAGMGGAGFPTAVKL------NDRQPIEFLLINAAECEPYITSDDVLM 186
Query: 505 RHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 630
R +++G I + I I + A L+ AI
Sbjct: 187 RERADDIIQGIEILRHMIKPALCVIGIEDNKPDAAQALETAI 228
>UniRef50_A4B3H4 Cluster: Electron transport complex protein RnfC;
n=1; Alteromonas macleodii 'Deep ecotype'|Rep: Electron
transport complex protein RnfC - Alteromonas macleodii
'Deep ecotype'
Length = 852
Score = 42.3 bits (95), Expect = 0.015
Identities = 25/83 (30%), Positives = 44/83 (53%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ + +G+ G GGAGFPT +K S +KP + +L++N E EP D +MR
Sbjct: 140 LIEAICQAGISGMGGAGFPTHIKTS-TSKPVE----FLILNGIECEPYITSDDRLMREHA 194
Query: 517 HKLVEGCLIAGRAMGAQAAYIYI 585
++ +G I +G +A + +
Sbjct: 195 WQIRQGLDILTHLIGPKAIIVAV 217
>UniRef50_Q1EUM7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Clostridium oremlandii
OhILAs|Rep: Respiratory-chain NADH dehydrogenase domain,
51 kDa subunit - Clostridium oremlandii OhILAs
Length = 388
Score = 41.9 bits (94), Expect = 0.019
Identities = 28/92 (30%), Positives = 43/92 (46%)
Frame = +1
Query: 313 ILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD 492
+++K TD + +K +G+ G GGAGFPT +K D Y++VNA E EP +
Sbjct: 70 MMIKATDNYLEAIKEAGVVGAGGAGFPTHIKLDV-----DLTGGYVIVNAAECEPVLNHN 124
Query: 493 REIMRHDPHKLVEGCLIAGRAMGAQAAYIYIR 588
+ P ++ G A YI I+
Sbjct: 125 MLAIEKQPDLILRGLKYVMEITKAAKGYIAIK 156
>UniRef50_Q02B56 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit precursor; n=1; Solibacter
usitatus Ellin6076|Rep: Respiratory-chain NADH
dehydrogenase domain, 51 kDa subunit precursor -
Solibacter usitatus (strain Ellin6076)
Length = 436
Score = 41.9 bits (94), Expect = 0.019
Identities = 24/74 (32%), Positives = 40/74 (54%)
Frame = +1
Query: 346 EMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKL 525
+++ G+ G GGAGFPT +K + + ++++ N E EP KD E+M+H +
Sbjct: 5 KLREFGVVGAGGAGFPTYVK-------AQSQVEFMIANGAECEPLIHKDAELMKHFAPGI 57
Query: 526 VEGCLIAGRAMGAQ 567
++G A GAQ
Sbjct: 58 LDGMTSMMSATGAQ 71
>UniRef50_A6NT39 Cluster: Putative uncharacterized protein; n=1;
Bacteroides capillosus ATCC 29799|Rep: Putative
uncharacterized protein - Bacteroides capillosus ATCC
29799
Length = 454
Score = 41.9 bits (94), Expect = 0.019
Identities = 28/84 (33%), Positives = 41/84 (48%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++ ++ SGL G GGAGFPT W +N D LV+N E EP D MR
Sbjct: 143 LLDAVRKSGLVGLGGAGFPT---WVKLNATVD----RLVINGSECEPYCTVDYIAMRDYA 195
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIR 588
+ EG I +G + A + ++
Sbjct: 196 ADMAEGVRIVKTLLGIEKAIVGVK 219
>UniRef50_A3DI53 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Clostridium thermocellum ATCC
27405|Rep: Electron transport complex, RnfABCDGE type, C
subunit - Clostridium thermocellum (strain ATCC 27405 /
DSM 1237)
Length = 439
Score = 41.9 bits (94), Expect = 0.019
Identities = 29/83 (34%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Frame = +1
Query: 340 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKD-REIMRHDP 516
++ ++ SGL G GGAGFP +K ++ P D + L++NA E EP D REI+ +
Sbjct: 123 ISAIRESGLVGLGGAGFPAHVK---LSPPPDKKIDTLIINAAECEPYITSDYREIIENS- 178
Query: 517 HKLVEGCLIAGRAMGAQAAYIYI 585
+V G I +G + I I
Sbjct: 179 WNVVSGINIIMEILGIENVLIGI 201
>UniRef50_A1U014 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Gammaproteobacteria|Rep:
Respiratory-chain NADH dehydrogenase domain, 51 kDa
subunit - Marinobacter aquaeolei (strain ATCC 700491 /
DSM 11845 / VT8)(Marinobacter hydrocarbonoclasticus
(strain DSM 11845))
Length = 449
Score = 41.9 bits (94), Expect = 0.019
Identities = 25/95 (26%), Positives = 48/95 (50%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+V +++ +G+ G GGAGFP+ +K R L+ N E EP KD+ +++
Sbjct: 10 LVEKVRNAGVVGAGGAGFPSYVK-------IQARADVLIANGAECEPLLYKDQTVIQRFS 62
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 621
+L++G + GA I I+ + + S+++
Sbjct: 63 AELLQGMALLMEQTGASRGVIAIKEKHQDSISHIE 97
>UniRef50_A5N7M5 Cluster: RnfC; n=1; Clostridium kluyveri DSM
555|Rep: RnfC - Clostridium kluyveri DSM 555
Length = 452
Score = 41.1 bits (92), Expect = 0.034
Identities = 22/83 (26%), Positives = 45/83 (54%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I++ ++ +G+ G GGA FP+ +K ++ P+D + ++ ++N E EP D M
Sbjct: 124 IMSIIREAGIVGMGGATFPSHVK---LSPPADKKVEFFILNGAECEPYLTSDYRSMLEYT 180
Query: 517 HKLVEGCLIAGRAMGAQAAYIYI 585
++V G I + + A+ ++ I
Sbjct: 181 DRIVSGVKIIMKILKAEQGFVGI 203
>UniRef50_A5EVI2 Cluster: Electron transport complex protein, C
subunit; n=1; Dichelobacter nodosus VCS1703A|Rep:
Electron transport complex protein, C subunit -
Dichelobacter nodosus (strain VCS1703A)
Length = 535
Score = 41.1 bits (92), Expect = 0.034
Identities = 30/94 (31%), Positives = 46/94 (48%), Gaps = 1/94 (1%)
Frame = +1
Query: 361 GLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TCKDREIMRHDPHKLVEGC 537
G+ G GGAGFPT K + K+LV+NA E EP +C D +I H ++V G
Sbjct: 144 GVVGLGGAGFPTARKLAL-------AAKHLVINAAECEPYISCDDMQIREH-AAQIVRGA 195
Query: 538 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 639
++ + + I + + L+ AIA+A
Sbjct: 196 QLSAYILSVDSIRFGIENDKPQAIAALEKAIADA 229
>UniRef50_A7B0F4 Cluster: Putative uncharacterized protein; n=1;
Ruminococcus gnavus ATCC 29149|Rep: Putative
uncharacterized protein - Ruminococcus gnavus ATCC 29149
Length = 457
Score = 40.7 bits (91), Expect = 0.045
Identities = 26/96 (27%), Positives = 48/96 (50%)
Frame = +1
Query: 349 MKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLV 528
++ +G+ G GGAGFPT K D R + +++N E EP R+++ ++V
Sbjct: 19 LQQNGIVGAGGAGFPTYAK-------LDQRAETIILNCAECEPLLRLHRQLLEKYAREIV 71
Query: 529 EGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
+ + G+A+GA+ I I+ + ++ I E
Sbjct: 72 DTFHLVGQAVGAKEVIIGIKKAYKQTIEAVESVIGE 107
>UniRef50_Q9XDM9 Cluster: Propanediol utilization protein; n=15;
Enterobacteriaceae|Rep: Propanediol utilization protein
- Salmonella typhimurium
Length = 451
Score = 40.3 bits (90), Expect = 0.059
Identities = 27/89 (30%), Positives = 44/89 (49%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 510
D I ++ +G+ G GGAGFP +K + + +VNA E EP D+++M
Sbjct: 15 DEIRERVRAAGVVGAGGAGFPAHVK-------LQAQVEIFLVNAAECEPMLKVDQQLMWQ 67
Query: 511 DPHKLVEGCLIAGRAMGAQAAYIYIRGEF 597
+LV G A A GA+ I ++ ++
Sbjct: 68 QAARLVRGVQYAMTATGAREGVIALKEKY 96
>UniRef50_Q2BP71 Cluster: Electron transport complex protein RnfC;
n=5; Gammaproteobacteria|Rep: Electron transport complex
protein RnfC - Neptuniibacter caesariensis
Length = 1047
Score = 40.3 bits (90), Expect = 0.059
Identities = 28/101 (27%), Positives = 47/101 (46%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++ ++ G+ G GGAGFPT +K ++ D LV+NA E EP D +MR
Sbjct: 127 LLDFIRFRGISGMGGAGFPTDVK---LHLGDDHIVNTLVINAMECEPYITADDMLMREHA 183
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 639
++V+G I + I ++ A+AE+
Sbjct: 184 DQVVKGIEIIAHLLKPHHVMIGTEDNKPQAIRAMEQAVAES 224
>UniRef50_Q1ZEG2 Cluster: Electron transport complex protein RnfC;
n=1; Psychromonas sp. CNPT3|Rep: Electron transport
complex protein RnfC - Psychromonas sp. CNPT3
Length = 839
Score = 40.3 bits (90), Expect = 0.059
Identities = 22/88 (25%), Positives = 45/88 (51%)
Frame = +1
Query: 322 KGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREI 501
+ + ++++E++ +G+ G GGAGFPT +K + L++NA E EP D +
Sbjct: 138 QSSHFLIDEIQKAGIVGLGGAGFPTHLKLK-----GHEATQLLLINAAECEPYISADDRL 192
Query: 502 MRHDPHKLVEGCLIAGRAMGAQAAYIYI 585
M+ ++++ G + + + I I
Sbjct: 193 MQEHANEIIAGINVLQHILNPKLTIIAI 220
>UniRef50_Q9CNP2 Cluster: Electron transport complex protein rnfC;
n=21; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Pasteurella multocida
Length = 835
Score = 39.9 bits (89), Expect = 0.079
Identities = 26/79 (32%), Positives = 42/79 (53%), Gaps = 1/79 (1%)
Frame = +1
Query: 310 EILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPG-TC 486
+ L + + ++ ++ +G+ G GGA FPT K K + K L++N E EP TC
Sbjct: 126 DFLTQTPEKLIEKLYQAGVAGLGGAVFPTAAKLHSAEK----QVKLLIINGAECEPYITC 181
Query: 487 KDREIMRHDPHKLVEGCLI 543
DR +MR +++EG I
Sbjct: 182 DDR-LMRDYADEIIEGTRI 199
>UniRef50_Q1VMJ2 Cluster: Formate dehydrogenase, beta subunit; n=1;
Psychroflexus torquis ATCC 700755|Rep: Formate
dehydrogenase, beta subunit - Psychroflexus torquis ATCC
700755
Length = 243
Score = 39.5 bits (88), Expect = 0.10
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNK 423
D ++ +++ S L+G GGAGFPTG KW + +
Sbjct: 212 DSVLTQLENSALKGLGGAGFPTGKKWRIVKQ 242
>UniRef50_A7GJH3 Cluster: Respiratory-chain NADH dehydrogenase
family protein; n=16; Clostridiaceae|Rep:
Respiratory-chain NADH dehydrogenase family protein -
Clostridium botulinum (strain Langeland / NCTC 10281 /
Type F)
Length = 428
Score = 39.5 bits (88), Expect = 0.10
Identities = 29/108 (26%), Positives = 56/108 (51%)
Frame = +1
Query: 316 LLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDR 495
LL+ ++ I++ ++ +G+ G GGAGFPT +K M+ +G ++ NA E EP +
Sbjct: 73 LLESSNNILDLIQAAGIVGMGGAGFPTHIK---MDVNLNG--GVVIANAVECEPLLAHNI 127
Query: 496 EIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 639
+ ++P + +G A A+ A I+ + S+L+ I ++
Sbjct: 128 NQIINEPELIYKGLCYAMEAVNASKGVFAIKSKNVEAISSLKNVIKDS 175
>UniRef50_A1WTR7 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Halorhodospira halophila SL1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Halorhodospira halophila (strain DSM 244 / SL1)
(Ectothiorhodospirahalophila (strain DSM 244 / SL1))
Length = 506
Score = 39.5 bits (88), Expect = 0.10
Identities = 27/76 (35%), Positives = 40/76 (52%), Gaps = 2/76 (2%)
Frame = +1
Query: 358 SGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPG-TCKDREIMRHDPHKLVE 531
+G+ G GGA FP +K G+P L++N E EP TC DR +MR +++
Sbjct: 139 AGIVGMGGAAFPAAVKLGA------GQPVATLILNGGECEPYLTCDDR-LMRERAAGIID 191
Query: 532 GCLIAGRAMGAQAAYI 579
G + RA+GA+ I
Sbjct: 192 GAQLMARALGAERTAI 207
>UniRef50_Q5P537 Cluster: Electron transport complex protein rnfC;
n=10; Proteobacteria|Rep: Electron transport complex
protein rnfC - Azoarcus sp. (strain EbN1) (Aromatoleum
aromaticum (strain EbN1))
Length = 508
Score = 39.1 bits (87), Expect = 0.14
Identities = 25/83 (30%), Positives = 39/83 (46%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I + +G+ G GGA FP+ +K ++ + L++N E EP D +MR
Sbjct: 133 IGRRVSAAGIVGLGGAAFPSAVK---LSGGREANVDLLIINGGECEPFLSCDDRLMRERA 189
Query: 517 HKLVEGCLIAGRAMGAQAAYIYI 585
++G I A GA+ A I I
Sbjct: 190 ADAIDGVAIMLHATGAREARIGI 212
>UniRef50_Q5NLH4 Cluster: NADH:ubiquinone oxidoreductase subunit;
n=1; Zymomonas mobilis|Rep: NADH:ubiquinone
oxidoreductase subunit - Zymomonas mobilis
Length = 487
Score = 39.1 bits (87), Expect = 0.14
Identities = 29/95 (30%), Positives = 44/95 (46%)
Frame = +1
Query: 358 SGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGC 537
+G+ G GGA FP +K + + S K +V+N E EP D +M+ +++ G
Sbjct: 134 AGVVGLGGAAFPAAVK---LEQSSQKPIKMVVLNGAECEPYLTGDDRVMQEYADEVISGG 190
Query: 538 LIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAY 642
+ A+GA I I EA + AEAY
Sbjct: 191 RLIAHAVGAPKVVIGIERN-KPEALAIMKKTAEAY 224
>UniRef50_Q15RL3 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Proteobacteria|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Pseudoalteromonas atlantica (strain T6c / BAA-1087)
Length = 890
Score = 38.7 bits (86), Expect = 0.18
Identities = 25/103 (24%), Positives = 48/103 (46%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ + +G+ G GGAGFPT +K + P +++++N E EP D +MR
Sbjct: 144 VLEAICNAGISGMGGAGFPTHIKAA----PKKD-VEFIIINGVECEPYITSDDRLMREHA 198
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQ 645
++ +G + + + YI I ++VA ++ Q
Sbjct: 199 WQIRQGIDVLCHLLSPKQVYIAIEDNKPEAIEAMRVACQQSEQ 241
>UniRef50_A6PDB0 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Shewanella sediminis HAW-EB3|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Shewanella sediminis HAW-EB3
Length = 842
Score = 38.7 bits (86), Expect = 0.18
Identities = 25/74 (33%), Positives = 39/74 (52%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I+ +++ +G+ G GGA FPT +K +N SD + L++NA E EP D +MR
Sbjct: 139 ILRKIQDAGIAGLGGAAFPTHIK---LNPASD--IELLIINAIECEPYITADDMLMREHS 193
Query: 517 HKLVEGCLIAGRAM 558
+ G I R +
Sbjct: 194 DAICLGIAIIHRLL 207
>UniRef50_A6BIN7 Cluster: Putative uncharacterized protein; n=1;
Dorea longicatena DSM 13814|Rep: Putative
uncharacterized protein - Dorea longicatena DSM 13814
Length = 471
Score = 38.7 bits (86), Expect = 0.18
Identities = 33/111 (29%), Positives = 51/111 (45%), Gaps = 17/111 (15%)
Frame = +1
Query: 349 MKTSGLRGRGGAGFPTGMKWSF-MNKPSDGR---------PK-------YLVVNADEGEP 477
+K +G+ G GGAGFPTG+K + + + G PK Y++VNA E EP
Sbjct: 90 VKAAGIVGMGGAGFPTGVKLNINLEETPMGELDPEINPELPKDFKLDCGYILVNAAECEP 149
Query: 478 GTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAI 630
G + + KL+ G + A+ A I I+ + + LQ A+
Sbjct: 150 GLEHNTRQIEEQSDKLIRGIKYSMEITHAKKAIIAIKKKHHKAIKVLQKAL 200
>UniRef50_Q3A7W8 Cluster: Predicted NADH:ubiquinone oxidoreductase,
subunit RnfC; n=1; Pelobacter carbinolicus DSM 2380|Rep:
Predicted NADH:ubiquinone oxidoreductase, subunit RnfC -
Pelobacter carbinolicus (strain DSM 2380 / Gra Bd 1)
Length = 437
Score = 37.9 bits (84), Expect = 0.32
Identities = 22/81 (27%), Positives = 41/81 (50%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++ ++ +G+ G GGA FP+ +K ++ P D ++VNA E EP DR +
Sbjct: 124 MLDRIREAGVVGMGGAAFPSHVK---LDPPRDKTIDTVIVNAVECEPWLTADRRTLLERM 180
Query: 517 HKLVEGCLIAGRAMGAQAAYI 579
K++ G + + A +I
Sbjct: 181 EKVLTGIEVLQKITDADHVWI 201
>UniRef50_Q2NSZ7 Cluster: Putative iron-sulfur binding NADH
dehydrogenase; n=1; Sodalis glossinidius str.
'morsitans'|Rep: Putative iron-sulfur binding NADH
dehydrogenase - Sodalis glossinidius (strain morsitans)
Length = 663
Score = 37.9 bits (84), Expect = 0.32
Identities = 22/69 (31%), Positives = 33/69 (47%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++ + SG+ G GGAGFPT K + + L++N E EP D +MR
Sbjct: 135 LLSRIHESGIAGLGGAGFPTAAKLG----GGEHGVETLIINGAECEPYITADDRLMREHA 190
Query: 517 HKLVEGCLI 543
+V G I
Sbjct: 191 RDIVTGMAI 199
>UniRef50_Q1N6T4 Cluster: Electron transport complex protein RnfC;
n=1; Oceanobacter sp. RED65|Rep: Electron transport
complex protein RnfC - Oceanobacter sp. RED65
Length = 727
Score = 37.9 bits (84), Expect = 0.32
Identities = 25/68 (36%), Positives = 37/68 (54%)
Frame = +1
Query: 331 DWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRH 510
D +++ ++ SG+ G GGA FPT +K P + R L++NA E EP D +MR
Sbjct: 129 DTLIDIIQQSGITGLGGASFPTHVKTCV---PEE-RIDTLILNAAECEPYITADDMLMRS 184
Query: 511 DPHKLVEG 534
LV+G
Sbjct: 185 YADGLVKG 192
>UniRef50_A1SSX3 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Psychromonas ingrahamii 37|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Psychromonas ingrahamii (strain 37)
Length = 857
Score = 37.9 bits (84), Expect = 0.32
Identities = 21/66 (31%), Positives = 36/66 (54%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
+++ ++ SG+ G GG GFP+ +K S + K L++NA E EP D +M+
Sbjct: 142 LIDLIQQSGIIGMGGGGFPSHLKLS-----NAHNVKLLIINAIECEPYITADDRLMQEHA 196
Query: 517 HKLVEG 534
+L+ G
Sbjct: 197 DQLITG 202
>UniRef50_Q9HYB8 Cluster: Electron transport complex protein rnfC;
n=12; Gammaproteobacteria|Rep: Electron transport
complex protein rnfC - Pseudomonas aeruginosa
Length = 774
Score = 37.5 bits (83), Expect = 0.42
Identities = 27/100 (27%), Positives = 48/100 (48%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ ++ +G+ G GGAGFPT K +P++ + LVVN E EP D +MR
Sbjct: 127 LLERIRAAGIGGLGGAGFPTAAK--LAARPAE-KIHTLVVNGAECEPYISADDLLMRERA 183
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
+++ G I + + + + I + + L A+ E
Sbjct: 184 TQVLGGIDILVQILCPEEVLVGIEDDKPEAIAALGAALGE 223
>UniRef50_Q89AW8 Cluster: Electron transport complex protein rnfC;
n=1; Buchnera aphidicola (Baizongia pistaciae)|Rep:
Electron transport complex protein rnfC - Buchnera
aphidicola subsp. Baizongia pistaciae
Length = 505
Score = 37.5 bits (83), Expect = 0.42
Identities = 22/69 (31%), Positives = 37/69 (53%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++N + SG+ G G+GF T K + G+ LVVNA E EP D ++++
Sbjct: 148 LINLIYHSGILGLSGSGFSTSKKLQC----AVGKVHTLVVNAVESEPCVTSDDCLIQNFS 203
Query: 517 HKLVEGCLI 543
++++GC I
Sbjct: 204 KEIIDGCKI 212
>UniRef50_Q5FP48 Cluster: Outer membrane protein; n=2; Gluconobacter
oxydans|Rep: Outer membrane protein - Gluconobacter
oxydans (Gluconobacter suboxydans)
Length = 518
Score = 36.3 bits (80), Expect = 0.97
Identities = 19/73 (26%), Positives = 36/73 (49%), Gaps = 1/73 (1%)
Frame = -1
Query: 389 KPAPPLPRRPDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRP-YKFVKTRSLSAS 213
+P P LPR PD S+ + + P +++ +Y + AR + + P + T + +AS
Sbjct: 294 RPIPDLPRFPDSLPSIVLANRPDIRVAEAEYAADTARVGIAVSNLYPKFMIPLTFNPNAS 353
Query: 212 GPYLSFEGAWVCW 174
Y +F+ + W
Sbjct: 354 AAYQAFQAGGMAW 366
>UniRef50_Q1AWR7 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=2; Rubrobacter xylanophilus
DSM 9941|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Rubrobacter xylanophilus
(strain DSM 9941 / NBRC 16129)
Length = 388
Score = 36.3 bits (80), Expect = 0.97
Identities = 23/64 (35%), Positives = 34/64 (53%), Gaps = 1/64 (1%)
Frame = +1
Query: 307 KEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRP-KYLVVNADEGEPGT 483
+E+ + V+ M+ +G+ G GG GFPT K+ RP +L+VNA E EPG
Sbjct: 10 EEVKALSREEAVDIMQHAGIVGAGGGGFPTYFKYK--------RPLPHLIVNATESEPGY 61
Query: 484 CKDR 495
D+
Sbjct: 62 WGDK 65
>UniRef50_A0L5G6 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=1; Magnetococcus sp. MC-1|Rep:
Electron transport complex, RnfABCDGE type, C subunit -
Magnetococcus sp. (strain MC-1)
Length = 605
Score = 36.3 bits (80), Expect = 0.97
Identities = 25/83 (30%), Positives = 42/83 (50%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
I + ++ +G+ G GGA FP+ +K ++ P + + + LV+N E EP D +M
Sbjct: 132 IRDAVRHAGIVGLGGATFPSHVK---LSPPGEKKVELLVLNGVECEPYLTCDARLMEERS 188
Query: 517 HKLVEGCLIAGRAMGAQAAYIYI 585
+V G I A+ + A I I
Sbjct: 189 GLIVTGVRIMLHALHCKEAVIGI 211
>UniRef50_Q18DS5 Cluster: NAD-reducing hydrogenase, alpha subunit;
n=1; Haloquadratum walsbyi DSM 16790|Rep: NAD-reducing
hydrogenase, alpha subunit - Haloquadratum walsbyi
(strain DSM 16790)
Length = 502
Score = 35.9 bits (79), Expect = 1.3
Identities = 18/44 (40%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Frame = +1
Query: 709 GAGAYICGEETALIXSIEGKQGXP-RLKPPFPXDVGLFGCPTTV 837
G Y E T + +IEG RL+PP P VGL+G PT +
Sbjct: 254 GPAEYRAAEPTMALEAIEGNHRLEARLRPPGPESVGLYGRPTLI 297
>UniRef50_Q30W86 Cluster: Electron transfer protein; n=1;
Desulfovibrio desulfuricans G20|Rep: Electron transfer
protein - Desulfovibrio desulfuricans (strain G20)
Length = 442
Score = 35.5 bits (78), Expect = 1.7
Identities = 24/89 (26%), Positives = 42/89 (47%)
Frame = +1
Query: 328 TDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMR 507
T V ++++G+ G GGAG PT +K +D ++VN EP D +++
Sbjct: 2 TGQTVECIRSAGVVGAGGAGLPTHIK-------ADASVDTVLVNGASCEPLLMSDPYLIQ 54
Query: 508 HDPHKLVEGCLIAGRAMGAQAAYIYIRGE 594
P ++ G L GA+ I ++G+
Sbjct: 55 AHPDIVIRGLLAVMDCTGARRGIICLKGK 83
>UniRef50_Q3YL96 Cluster: CdiA; n=3; Escherichia coli|Rep: CdiA -
Escherichia coli
Length = 3132
Score = 35.1 bits (77), Expect = 2.2
Identities = 15/24 (62%), Positives = 15/24 (62%)
Frame = +1
Query: 328 TDWIVNEMKTSGLRGRGGAGFPTG 399
T W E KTSGL G GG GF TG
Sbjct: 2182 TSWRFKETKTSGLTGTGGIGFTTG 2205
>UniRef50_A4RAI3 Cluster: Putative uncharacterized protein; n=1;
Magnaporthe grisea|Rep: Putative uncharacterized protein
- Magnaporthe grisea (Rice blast fungus) (Pyricularia
grisea)
Length = 916
Score = 35.1 bits (77), Expect = 2.2
Identities = 28/112 (25%), Positives = 49/112 (43%), Gaps = 1/112 (0%)
Frame = -1
Query: 539 RHPSTSLWGS*RIISLSLQVPGSPSSALTTRYFGRPSEGLFMNDHFIPVGKPAP-PLPRR 363
R PS+ +W L++ V S S T + + G ++D F+ P P P R
Sbjct: 54 RWPSSYVWTKAEERLLTICVVPSAGSLNPTEE--KRAAGTHLDDFFVTTTIPLPLPHARH 111
Query: 362 PDVFISLTIQSVPFSKISFVKYQSPRARAPFNLHSCRPYKFVKTRSLSASGP 207
P ++L I S+ + ++ + Y P R+P + P + S++ GP
Sbjct: 112 PTTVVALFIPSIRGTSVAGMPYTPPTHRSPASSQPSSP-DASRRSSIAGGGP 162
>UniRef50_Q0HIH8 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=16; Shewanella|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Shewanella sp. (strain MR-4)
Length = 809
Score = 34.3 bits (75), Expect = 3.9
Identities = 24/101 (23%), Positives = 48/101 (47%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ ++ +G+ G GGA FP+ +K +N S+ + +++N E EP D +MR
Sbjct: 133 MIAKIHGAGIAGMGGAAFPSHIK---LNPVSE--IELVIINGVECEPYISADDRLMREYS 187
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAEA 639
++ G I R + + I I +Q A++++
Sbjct: 188 QDILAGIGIIHRLLAPKRIVIAIEDNKPEAIKAMQQAVSQS 228
>UniRef50_Q0F0I1 Cluster: Electron transport complex protein RnfC;
n=1; Mariprofundus ferrooxydans PV-1|Rep: Electron
transport complex protein RnfC - Mariprofundus
ferrooxydans PV-1
Length = 521
Score = 34.3 bits (75), Expect = 3.9
Identities = 31/114 (27%), Positives = 49/114 (42%)
Frame = +1
Query: 292 DWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEG 471
DW T LL+ + GL G GGA FPT +K + + S + +V+N E
Sbjct: 130 DWRNTDPALLR------ERARMCGLAGLGGAVFPTFIK---LVQDSRFPIETVVLNGIEC 180
Query: 472 EPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIA 633
EP D +M +++ G I + +A I I + A ++ A+A
Sbjct: 181 EPWLTTDHRLMLEYADEILTGLAIIMHMVNTDSAIIAIEDNKSDAAEAIEQALA 234
>UniRef50_A7QGL6 Cluster: Chromosome chr12 scaffold_93, whole genome
shotgun sequence; n=1; Vitis vinifera|Rep: Chromosome
chr12 scaffold_93, whole genome shotgun sequence - Vitis
vinifera (Grape)
Length = 322
Score = 34.3 bits (75), Expect = 3.9
Identities = 24/98 (24%), Positives = 45/98 (45%)
Frame = -3
Query: 513 VMTHNLPVFTSTRFTLISINHEIFWTTIRRLVHE*PLHSCWETCSSPASKARCFHFINDP 334
V+T L V FT ISI+++I I +E + W+T ++ +++ R HF P
Sbjct: 185 VLTWALRVLYIFSFTFISIDNKIGRMAIGYFWNEGSFDARWKTNTTTSTETRFLHFTYYP 244
Query: 333 VGSFQ*NLLRQIPVPSGESTLQPPFMSTIQVCENPIAI 220
+ + + + +P T + M I + E+ + I
Sbjct: 245 IRTLEYYVSGLVPSTHFHGTFKKWVMQPINIGEDAVLI 282
>UniRef50_P57215 Cluster: Electron transport complex protein rnfC;
n=1; Buchnera aphidicola (Acyrthosiphon pisum)|Rep:
Electron transport complex protein rnfC - Buchnera
aphidicola subsp. Acyrthosiphon pisum (Acyrthosiphon
pisumsymbiotic bacterium)
Length = 473
Score = 34.3 bits (75), Expect = 3.9
Identities = 26/95 (27%), Positives = 42/95 (44%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDP 516
++ + SG+ G GG FP+ K F S R L+VNA E EP D ++ +
Sbjct: 95 LIKIIHQSGVVGLGGGQFPSSKKIIF----SINRAHTLIVNAVESEPYITSDNCLIYNHI 150
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQ 621
+++ GC I + I I+ + S +Q
Sbjct: 151 SEILIGCKIICWITKIKTVLIAIQEDNIQSISKIQ 185
>UniRef50_Q82NN9 Cluster: Putative uncharacterized protein; n=1;
Streptomyces avermitilis|Rep: Putative uncharacterized
protein - Streptomyces avermitilis
Length = 170
Score = 33.9 bits (74), Expect = 5.2
Identities = 28/100 (28%), Positives = 44/100 (44%)
Frame = +1
Query: 64 SARNMAGALTRVIQGTKPHLGIIGPLAINVNNVPVRFQQTQAPSKDKYGPLADSDRVFTN 243
S +A LT G + L + VP+ Q + P++D PL + RV
Sbjct: 54 SPGELAADLTVACDGRDSSVRRAAGLEPSYFEVPMDVWQVRVPARD---PLKEG-RVSLT 109
Query: 244 LYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSG 363
+ + + L RGD+Y T ++ KGTD + M +SG
Sbjct: 110 V---RDGQFAATLDRGDYYQTSYLIKKGTDGALRPMASSG 146
>UniRef50_A6VVJ2 Cluster: Electron transport complex, RnfABCDGE
type, C subunit; n=2; Marinomonas|Rep: Electron
transport complex, RnfABCDGE type, C subunit -
Marinomonas sp. MWYL1
Length = 981
Score = 33.9 bits (74), Expect = 5.2
Identities = 21/58 (36%), Positives = 30/58 (51%)
Frame = +1
Query: 361 GLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEG 534
G+ G GGAGFPT +K +K + ++NA E EP D ++R +LV G
Sbjct: 137 GIIGMGGAGFPTQVKLQGAHK---NPLTHFIINAAECEPYITADDMLIREKTLELVLG 191
>UniRef50_A6M0M4 Cluster: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit; n=1; Clostridium beijerinckii
NCIMB 8052|Rep: Respiratory-chain NADH dehydrogenase
domain, 51 kDa subunit - Clostridium beijerinckii NCIMB
8052
Length = 441
Score = 33.9 bits (74), Expect = 5.2
Identities = 23/99 (23%), Positives = 48/99 (48%)
Frame = +1
Query: 340 VNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPH 519
++ +K +G+ G GGAGFPT +K + + K ++VN E EP D+++M
Sbjct: 6 IDLIKDAGIIGAGGAGFPTHVK-------LNAKVKTVIVNGAECEPLLKVDQQLMDKKAD 58
Query: 520 KLVEGCLIAGRAMGAQAAYIYIRGEFYNEASNLQVAIAE 636
+++ ++ I ++G++ + + L I +
Sbjct: 59 EILYALNKVVDETESEVGIIALKGKYKSAINTLNSKIKD 97
>UniRef50_A0JX02 Cluster: Peptidase S9, prolyl oligopeptidase active
site domain protein; n=3; Micrococcineae|Rep: Peptidase
S9, prolyl oligopeptidase active site domain protein -
Arthrobacter sp. (strain FB24)
Length = 701
Score = 33.9 bits (74), Expect = 5.2
Identities = 16/41 (39%), Positives = 22/41 (53%)
Frame = +1
Query: 355 TSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEP 477
T G R A P G+ +F+ +DG+P+ VV A GEP
Sbjct: 72 TRGFRDTAPAFSPDGLVLAFLRATADGKPQLYVVEAAGGEP 112
>UniRef50_Q6LTT0 Cluster: Hypothetical type I
restriction-modification system specificity determinant;
n=1; Photobacterium profundum|Rep: Hypothetical type I
restriction-modification system specificity determinant
- Photobacterium profundum (Photobacterium sp. (strain
SS9))
Length = 437
Score = 33.5 bits (73), Expect = 6.8
Identities = 17/40 (42%), Positives = 20/40 (50%)
Frame = +1
Query: 193 SKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKE 312
S K G L D +TN YG EW +G GD LT+E
Sbjct: 272 SNVKQGKLVIEDAKYTNEYGYKEWTSRGVPFPGDILLTRE 311
>UniRef50_A1HJR3 Cluster: Putative uncharacterized protein; n=1;
Ralstonia pickettii 12J|Rep: Putative uncharacterized
protein - Ralstonia pickettii 12J
Length = 364
Score = 33.5 bits (73), Expect = 6.8
Identities = 14/36 (38%), Positives = 20/36 (55%)
Frame = +1
Query: 640 YQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETAL 747
+QAG++ G+G FD F+ RG A + E AL
Sbjct: 84 HQAGVVADGGFGAGEQFDRFIQRGLAAQVAHERRAL 119
>UniRef50_Q0YTQ7 Cluster: Putative uncharacterized protein
precursor; n=3; Chlorobium|Rep: Putative uncharacterized
protein precursor - Chlorobium ferrooxidans DSM 13031
Length = 521
Score = 33.1 bits (72), Expect = 9.0
Identities = 31/107 (28%), Positives = 47/107 (43%), Gaps = 6/107 (5%)
Frame = +1
Query: 517 HKLVEGCLIAGRAMGAQAAYIYIRGEFYN-EASNLQVAIAEAYQAG--LIGKNSCGSGYD 687
H+++ L+ G + + AAY RGE +L+++ E G +G S G +D
Sbjct: 12 HRILGRTLLLGALLSSSAAYGTERGEASPLSTGSLKISYEEFTLPGNEKMGMTSLGISHD 71
Query: 688 FDIFVHRGAGAYIC--GEETALIX-SIEGKQGXPRLKPPFPXDVGLF 819
F H G G+++ GE I I+G P L D GLF
Sbjct: 72 FTKNFHAGVGSWMAVKGERGGFITLGIDGGLFFP-LTERIGVDTGLF 117
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 954,984,049
Number of Sequences: 1657284
Number of extensions: 22098261
Number of successful extensions: 56285
Number of sequences better than 10.0: 153
Number of HSP's better than 10.0 without gapping: 53485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 56131
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 74193458591
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -