Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_E07
(845 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC18E5.10 |||iron sulfur cluster assembly protein |Schizosacch... 155 1e-38
SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces pom... 28 1.9
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||... 28 1.9
SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual 27 3.3
SPBC365.02c |cox10||protoheme IX farnesyltransferase|Schizosacch... 27 3.3
SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr 1|... 27 3.3
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit... 27 4.4
SPCC417.06c |ppk35|mug27|serine/threonine protein kinase Ppk35|S... 27 4.4
SPBC244.02c |||U3 snoRNP-associated protein Utp6 |Schizosaccharo... 26 5.8
>SPBC18E5.10 |||iron sulfur cluster assembly protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 155 bits (375), Expect = 1e-38
Identities = 85/208 (40%), Positives = 124/208 (59%), Gaps = 5/208 (2%)
Frame = +1
Query: 229 RVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKW 408
R+F NL + R+ ALA G++ EIL I+ ++ S LRGRG GFPTG K
Sbjct: 33 RMFPNLIEKRIRRIDDALADGEYENLSEILKYDPLNIIELVQESELRGRGRYGFPTGEKM 92
Query: 409 SFMNKPSD---GRPK--YLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAGRAMGAQAA 573
+ K + GR + ++VNA E + G+ KDR ++RH+PHK++EG +IA RA+ A A
Sbjct: 93 LSLYKATSSERGRKEKPVVIVNAAENDIGSFKDRLLLRHEPHKIIEGAIIAARAVEASAC 152
Query: 574 YIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYICGEETALIX 753
Y++IR ++Y E +Q I +AY L+GKN G+ ++ +H GAG+YI GEE+ALI
Sbjct: 153 YLFIRKDYYEETVMMQKCIIQAYAKKLLGKNLLGTSIGLELLIHPGAGSYITGEESALIQ 212
Query: 754 SIEGKQGXPRLKPPFPXDVGLFGCPTTV 837
S++G+ P + GLFG PT V
Sbjct: 213 SLQGEFPVPDIPINNTITSGLFGLPTLV 240
>SPBC19C7.03 |cyr1|git2|adenylate cyclase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1692
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -1
Query: 530 STSLWGS*RIISLSLQVPGSPSSALTTRYFGRPSEGLFMNDHFIPV 393
S W + SL P TTR+F RPS G + F+ V
Sbjct: 253 SDDSWKAPESWGTSLPTEAIPKQVFTTRFFARPSLGNRKKEFFLRV 298
>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
3|||Manual
Length = 557
Score = 27.9 bits (59), Expect = 1.9
Identities = 15/48 (31%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
Frame = -1
Query: 494 LSLQVPGSPSSALTTRY-FGRPSEGLFMNDHFIPVGKPAPPLPRRPDV 354
L + +PGS + +T ++ P G++ F P+ APP+P P+V
Sbjct: 274 LRVSIPGSQPALVTPKHKMNVPPMGMYPLP-FSPLPSAAPPIPFSPNV 320
>SPAC3F10.09 |||1-|Schizosaccharomyces pombe|chr 1|||Manual
Length = 264
Score = 27.1 bits (57), Expect = 3.3
Identities = 10/22 (45%), Positives = 16/22 (72%)
Frame = -3
Query: 165 RYIVDINCQRPNNAQMWFCALN 100
R +VD++C+R +N WF A+N
Sbjct: 133 RLVVDVSCRRKDN--RWFAAIN 152
>SPBC365.02c |cox10||protoheme IX
farnesyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 387
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = -2
Query: 622 LANCLLHCRIHL*CKCMLLVHPWLGQQLDILPPVCG 515
L N +L+ I+ K + +V+ W+G + +PP+ G
Sbjct: 194 LGNIVLYMGIYTPLKRISIVNTWVGSLVGAIPPLMG 229
>SPAC1D4.10 |||tRNA endonuclease|Schizosaccharomyces pombe|chr
1|||Manual
Length = 809
Score = 27.1 bits (57), Expect = 3.3
Identities = 11/21 (52%), Positives = 15/21 (71%)
Frame = -1
Query: 386 PAPPLPRRPDVFISLTIQSVP 324
PAP P +P++FIS +QS P
Sbjct: 255 PAPLEPDKPELFISYIVQSHP 275
>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
hand and WH2 motif |Schizosaccharomyces pombe|chr
1|||Manual
Length = 1794
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = -3
Query: 300 IPVPSGESTLQPPFMSTIQ 244
+P P+ TL PP +ST+Q
Sbjct: 1181 VPAPAAPQTLNPPSVSTVQ 1199
>SPCC417.06c |ppk35|mug27|serine/threonine protein kinase
Ppk35|Schizosaccharomyces pombe|chr 3|||Manual
Length = 624
Score = 26.6 bits (56), Expect = 4.4
Identities = 9/28 (32%), Positives = 14/28 (50%)
Frame = +3
Query: 129 YWAFGN*CQQCTGALPADPGAFKRQVWT 212
YW+ G C +C P G+ ++ WT
Sbjct: 380 YWSLGCICYECLVGYPPFSGSTLQETWT 407
>SPBC244.02c |||U3 snoRNP-associated protein Utp6
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 488
Score = 26.2 bits (55), Expect = 5.8
Identities = 8/24 (33%), Positives = 15/24 (62%)
Frame = -3
Query: 141 QRPNNAQMWFCALNHSCQCTSHIS 70
+ PNNA++W A +H +++S
Sbjct: 136 KHPNNAELWVVACDHEFSINANVS 159
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,803,774
Number of Sequences: 5004
Number of extensions: 85389
Number of successful extensions: 241
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 240
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 418457710
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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