Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_E07
(845 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174 365 e-101
06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711 33 0.22
07_03_0684 + 20675947-20676157,20676236-20676336,20676428-206766... 31 1.5
02_05_1191 + 34856635-34856775,34856878-34856942,34857096-348571... 31 1.5
01_07_0345 + 42877363-42878367 29 4.7
07_01_0418 - 3186093-3186437,3187286-3187438,3187541-3188398,318... 29 6.2
03_06_0417 - 33782577-33782687,33782996-33783052,33783110-337832... 28 8.1
01_06_1802 + 39978634-39978880,39979016-39979431 28 8.1
>07_03_1481 + 26860051-26860104,26861114-26861143,26861714-26863174
Length = 514
Score = 365 bits (899), Expect = e-101
Identities = 162/217 (74%), Positives = 183/217 (84%)
Frame = +1
Query: 190 PSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDWYLTKEILLKGTDWIVNEMKTSGLR 369
P K +G L D DR+FTNLYG+H+ LKGA+ RGDW+ TK+++LKG DWIVNEMK SGLR
Sbjct: 78 PEKTHFGDLKDEDRIFTNLYGQHDPFLKGAMKRGDWHRTKDLVLKGADWIVNEMKKSGLR 137
Query: 370 GRGGAGFPTGMKWSFMNKPSDGRPKYLVVNADEGEPGTCKDREIMRHDPHKLVEGCLIAG 549
GRGGAGFP+G+KWSFM K SDGRP YLVVNADE EPGTCKDREIMRHDPHKL+EGCLIAG
Sbjct: 138 GRGGAGFPSGLKWSFMPKVSDGRPSYLVVNADESEPGTCKDREIMRHDPHKLLEGCLIAG 197
Query: 550 RAMGAQAAYIYIRGEFYNEASNLQVAIAEAYQAGLIGKNSCGSGYDFDIFVHRGAGAYIC 729
M A AAYIYIRGE+ NE NL A EAY AGL+GKN+CGSGYDFD+ +H GAGAYIC
Sbjct: 198 VGMRASAAYIYIRGEYVNERLNLLKAREEAYAAGLLGKNACGSGYDFDVHIHFGAGAYIC 257
Query: 730 GEETALIXSIEGKQGXPRLKPPFPXDVGLFGCPTTVT 840
GEETAL+ S+EGKQG PRLKPPFP + GL+GCPTTVT
Sbjct: 258 GEETALLESLEGKQGKPRLKPPFPANAGLYGCPTTVT 294
>06_03_1253 + 28761311-28761598,28761689-28761882,28762327-28762711
Length = 288
Score = 33.5 bits (73), Expect = 0.22
Identities = 16/50 (32%), Positives = 28/50 (56%), Gaps = 1/50 (2%)
Frame = +1
Query: 151 VNNVPVR-FQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 297
V+ P+R ++ T+A + + P A + RV+ +L+ EW +G R DW
Sbjct: 164 VDGTPIREYRNTEATTGVAF-PRAQAMRVYASLWDAEEWATQGGRVRTDW 212
>07_03_0684 +
20675947-20676157,20676236-20676336,20676428-20676630,
20677024-20677438
Length = 309
Score = 30.7 bits (66), Expect = 1.5
Identities = 12/49 (24%), Positives = 26/49 (53%)
Frame = +1
Query: 151 VNNVPVRFQQTQAPSKDKYGPLADSDRVFTNLYGRHEWRLKGALARGDW 297
V+ VP+R + + + + P+ VF++++ +W +G L + DW
Sbjct: 175 VDKVPIR-EYRNSDKPNTFFPIMKPMYVFSSIWNADDWATRGGLEKTDW 222
>02_05_1191 +
34856635-34856775,34856878-34856942,34857096-34857165,
34857499-34857570,34857668-34857871,34858793-34858866,
34858965-34859048,34859582-34859669,34859763-34859844,
34860178-34860251,34860474-34860581,34860683-34860747,
34861317-34861430,34861644-34861743,34861840-34861893,
34861972-34862067
Length = 496
Score = 30.7 bits (66), Expect = 1.5
Identities = 24/68 (35%), Positives = 34/68 (50%)
Frame = +1
Query: 271 KGALARGDWYLTKEILLKGTDWIVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYL 450
KG A D + KE+ L+G D + + S L GRG P G S ++K +DG +
Sbjct: 220 KGMGAHVDLFYRKELPLRGFDDEMRTVVASNLEGRGIRLHP-GTNLSELSKTADG----I 274
Query: 451 VVNADEGE 474
V D+GE
Sbjct: 275 KVVTDKGE 282
>01_07_0345 + 42877363-42878367
Length = 334
Score = 29.1 bits (62), Expect = 4.7
Identities = 12/39 (30%), Positives = 19/39 (48%)
Frame = +1
Query: 337 IVNEMKTSGLRGRGGAGFPTGMKWSFMNKPSDGRPKYLV 453
+ +M G G GG+G PT + WS S R + ++
Sbjct: 236 LYTQMDDGGFNGGGGSGSPTMIGWSSRGSRSSQRQRSII 274
>07_01_0418 -
3186093-3186437,3187286-3187438,3187541-3188398,
3188479-3188541
Length = 472
Score = 28.7 bits (61), Expect = 6.2
Identities = 14/37 (37%), Positives = 21/37 (56%)
Frame = -2
Query: 568 LVHPWLGQQLDILPPVCGGHDA*SPCLYKYQVHPHQH 458
L HP +++D+L C A P L K+++HPH H
Sbjct: 328 LRHPVTEKKIDLLDFACLLEAA--PLLQKFELHPHAH 362
>03_06_0417 -
33782577-33782687,33782996-33783052,33783110-33783205,
33783252-33783284,33783543-33783599,33783968-33784060,
33784308-33784395,33784812-33784835,33784956-33785164
Length = 255
Score = 28.3 bits (60), Expect = 8.1
Identities = 11/23 (47%), Positives = 15/23 (65%)
Frame = -1
Query: 380 PPLPRRPDVFISLTIQSVPFSKI 312
PP P+ P VF +TI S+P +I
Sbjct: 31 PPNPKNPVVFFDVTIGSIPAGRI 53
>01_06_1802 + 39978634-39978880,39979016-39979431
Length = 220
Score = 28.3 bits (60), Expect = 8.1
Identities = 8/17 (47%), Positives = 13/17 (76%)
Frame = -2
Query: 562 HPWLGQQLDILPPVCGG 512
+PWLG ++++ PP GG
Sbjct: 201 YPWLGDEMELTPPGAGG 217
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,533,702
Number of Sequences: 37544
Number of extensions: 645387
Number of successful extensions: 1585
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 1521
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1585
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2350456800
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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