Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_E05
(533 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit L27... 56 3e-09
SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr 2||... 31 0.082
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 29 0.44
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual 26 4.1
SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein interm... 25 5.4
SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces po... 25 5.4
SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|ch... 25 5.4
SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces pombe... 25 5.4
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom... 25 7.1
SPBC29A3.11c |||mitochondrial carboxylic acid transporter|Schizo... 25 9.4
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy... 25 9.4
>SPAP19A11.05c |mrp7||mitochondrial ribosomal protein subunit
L27|Schizosaccharomyces pombe|chr 2|||Manual
Length = 153
Score = 56.0 bits (129), Expect = 3e-09
Identities = 27/70 (38%), Positives = 43/70 (61%)
Frame = +3
Query: 84 VRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNG 263
+R ++K GGS++NT + G K + FV+AG +L QR T+FHPG N G G +
Sbjct: 34 IRTSTKHGGGSSKNTGDSAG-RRLGIKRSENQFVRAGEILIRQRGTKFHPGDNTGLGKDH 92
Query: 264 TLFAMEAGKV 293
T++++ +G V
Sbjct: 93 TIYSLVSGYV 102
>SPBC582.04c |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 601
Score = 31.5 bits (68), Expect = 0.082
Identities = 35/144 (24%), Positives = 56/144 (38%), Gaps = 18/144 (12%)
Frame = +3
Query: 6 VNTYRLK-MSFNILLK---TSERGIFLKEFVRNASKKTGGSTQNTNCK--------VKPK 149
V Y L +S+N+ ++ ++ F KEF+ N S G N + VK K
Sbjct: 433 VTYYNLNTLSWNLYIEYGHPTQNSTFYKEFISNISMSDDGRIYFMNTRDIKVRSLVVKLK 492
Query: 150 HRGWKVQDG---HFVQ-AGHMLATQRT--TRFHPGLNVGFGVNGTLFAMEAGKVVVTCEK 311
H+ W + G H + H + + T F PGL + V + G
Sbjct: 493 HKYWHLSSGFHLHITRFEAHDMGKVKDIDTDFEPGLQC-YQVGSDTSVLRYG-----LSF 546
Query: 312 FDPNWDHTWVQRMYKGRYDQTIYK 383
+DP WD+ +K ++ YK
Sbjct: 547 WDPKWDYLLADNQHKQQWQAPSYK 570
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 29.1 bits (62), Expect = 0.44
Identities = 16/39 (41%), Positives = 21/39 (53%), Gaps = 1/39 (2%)
Frame = -1
Query: 317 IKLFTCDNYF-SSLHCKQSTINTKTNIQSWMKTSGSLSS 204
+ LF + F SS+ K +I TKT I SW K G+ S
Sbjct: 649 LHLFQAQSDFESSVELKDRSIVTKTTIMSWSKYQGTKES 687
>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
Length = 188
Score = 25.8 bits (54), Expect = 4.1
Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 9/52 (17%)
Frame = -1
Query: 404 WYNIVIFFIDG---LVIAPFVHPLDPSVIP-----VWIKLFTCDNY-FSSLH 276
W+ FF IA F+HP D +V+P + LF+ ++ F+SLH
Sbjct: 77 WFFFFFFFFSHCRRFHIAIFIHPYDSNVVPFFCFFFYFSLFSFFSFLFTSLH 128
>SPBC646.17c |dic1|SPBC855.01c, SPBP35G2.01c, mug44|dynein
intermediate chain Dic1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 544
Score = 25.4 bits (53), Expect = 5.4
Identities = 17/83 (20%), Positives = 34/83 (40%)
Frame = +3
Query: 24 KMSFNILLKTSERGIFLKEFVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHML 203
K++ N ++ + F +E + + K + + + R WK ++A +
Sbjct: 188 KITLNSVVNSISYSSFFEELLITSYAKPKEALRTRGLAIVWNQR-WKNSPESVLKARSEI 246
Query: 204 ATQRTTRFHPGLNVGFGVNGTLF 272
+ + FHP L G NG +F
Sbjct: 247 TVCKPSPFHPQLIAGGAYNGQVF 269
>SPBC1773.11c |mug89||CDC50 domain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 396
Score = 25.4 bits (53), Expect = 5.4
Identities = 14/44 (31%), Positives = 22/44 (50%)
Frame = -1
Query: 347 PLDPSVIPVWIKLFTCDNYFSSLHCKQSTINTKTNIQSWMKTSG 216
P D + P W+ + D Y S ++T N+Q WM+T+G
Sbjct: 250 PDDVAPPPNWVLRYP-DGYTES---NMPDLSTMENLQVWMRTAG 289
>SPBC691.02c |||RINT1 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 678
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/28 (46%), Positives = 17/28 (60%), Gaps = 1/28 (3%)
Frame = -3
Query: 273 QTKYH*-HQNQHSILDENEWFFE*LTYV 193
Q +YH Q Q ++L + EWFFE L V
Sbjct: 212 QFRYHFMSQKQTNVLSKPEWFFEFLLKV 239
>SPAC3G9.11c |||pyruvate decarboxylase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 570
Score = 25.4 bits (53), Expect = 5.4
Identities = 13/47 (27%), Positives = 24/47 (51%)
Frame = -1
Query: 344 LDPSVIPVWIKLFTCDNYFSSLHCKQSTINTKTNIQSWMKTSGSLSS 204
L P + + K +T + LH + INT+ + Q+ +K G+ +S
Sbjct: 469 LTPIIFVINNKGYTIERLIHGLHAVYNDINTEWDYQNLLKGYGAKNS 515
>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1562
Score = 25.0 bits (52), Expect = 7.1
Identities = 17/52 (32%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Frame = -1
Query: 431 KFKSLMLGLWYNIVIFFIDGLVIAPFVHPLDPSVIPVWIKLFTCDN-YFSSL 279
+ +LG +Y FF+ ++ PFV S+ W TC N FSSL
Sbjct: 1296 RLSKYILGTFYKEQFFFLMQAIMQPFVGYTGQSLYESW--GLTCFNTLFSSL 1345
>SPBC29A3.11c |||mitochondrial carboxylic acid
transporter|Schizosaccharomyces pombe|chr 2|||Manual
Length = 297
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 320 WIKLFTCDNYFSSLHCKQSTINTKTNIQSWMKTSGSLS 207
+I LF C +S L+ + + KTN+ +T+ LS
Sbjct: 117 FISLFACPFEYSKLYSQIDMLLRKTNMGRRQETNSKLS 154
>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 211
Score = 24.6 bits (51), Expect = 9.4
Identities = 12/40 (30%), Positives = 19/40 (47%)
Frame = +3
Query: 36 NILLKTSERGIFLKEFVRNASKKTGGSTQNTNCKVKPKHR 155
N LK + +FL S+ T ++N+N VK K +
Sbjct: 158 NSFLKNQDESLFLSSSPITVSQGTKRKSKNSNSTVKKKKK 197
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,095,686
Number of Sequences: 5004
Number of extensions: 43885
Number of successful extensions: 153
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 220420454
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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