Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E05
         (533 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

BC021986-1|AAH21986.1|  148|Homo sapiens mitochondrial ribosomal...    88   2e-17
BC001066-1|AAH01066.1|  148|Homo sapiens mitochondrial ribosomal...    88   2e-17
AB049647-1|BAB40852.1|  148|Homo sapiens mitochondrial ribosomal...    88   2e-17

>BC021986-1|AAH21986.1|  148|Homo sapiens mitochondrial ribosomal
           protein L27 protein.
          Length = 148

 Score = 87.8 bits (208), Expect = 2e-17
 Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
 Frame = +3

Query: 84  VRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNG 263
           VR ASKK+GGS++N   K   + +G K  +GH+V AG+++ATQR  R+HPG +VG G N 
Sbjct: 28  VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK 87

Query: 264 TLFAMEAGKVVVTCEKFDPNWDHT----WVQRMYKGRYDQTIYKKYYNVIPEPQHQRFKL 431
            L+A+E G V  T E + P+  +T     + R+ KG     +YK + +V+P      FKL
Sbjct: 88  CLYALEEGIVRYTKEVYVPHPRNTEAVDLITRLPKG---AVLYKTFVHVVPAKPEGTFKL 144

Query: 432 I 434
           +
Sbjct: 145 V 145


>BC001066-1|AAH01066.1|  148|Homo sapiens mitochondrial ribosomal
           protein L27 protein.
          Length = 148

 Score = 87.8 bits (208), Expect = 2e-17
 Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
 Frame = +3

Query: 84  VRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNG 263
           VR ASKK+GGS++N   K   + +G K  +GH+V AG+++ATQR  R+HPG +VG G N 
Sbjct: 28  VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK 87

Query: 264 TLFAMEAGKVVVTCEKFDPNWDHT----WVQRMYKGRYDQTIYKKYYNVIPEPQHQRFKL 431
            L+A+E G V  T E + P+  +T     + R+ KG     +YK + +V+P      FKL
Sbjct: 88  CLYALEEGIVRYTKEVYVPHPRNTEAVDLITRLPKG---AVLYKTFVHVVPAKPEGTFKL 144

Query: 432 I 434
           +
Sbjct: 145 V 145


>AB049647-1|BAB40852.1|  148|Homo sapiens mitochondrial ribosomal
           protein L27 (L27mt) protein.
          Length = 148

 Score = 87.8 bits (208), Expect = 2e-17
 Identities = 49/121 (40%), Positives = 73/121 (60%), Gaps = 4/121 (3%)
 Frame = +3

Query: 84  VRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNG 263
           VR ASKK+GGS++N   K   + +G K  +GH+V AG+++ATQR  R+HPG +VG G N 
Sbjct: 28  VRYASKKSGGSSKNLGGKSSGRRQGIKKMEGHYVHAGNIIATQRHFRWHPGAHVGVGKNK 87

Query: 264 TLFAMEAGKVVVTCEKFDPNWDHT----WVQRMYKGRYDQTIYKKYYNVIPEPQHQRFKL 431
            L+A+E G V  T E + P+  +T     + R+ KG     +YK + +V+P      FKL
Sbjct: 88  CLYALEEGIVRYTKEVYVPHPRNTEAVDLITRLPKG---AVLYKTFVHVVPAKPEGTFKL 144

Query: 432 I 434
           +
Sbjct: 145 V 145


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 73,745,562
Number of Sequences: 237096
Number of extensions: 1596012
Number of successful extensions: 4040
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3863
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4037
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 5216942984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)