Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E05
         (533 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.        37   0.010
AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical...    37   0.010
AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical...    37   0.010
AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm rec...    28   3.7  
AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm rece...    28   3.7  
Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical p...    28   4.8  
AF016683-8|AAM97998.1|  480|Caenorhabditis elegans Hypothetical ...    28   4.8  
Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical pr...    27   8.5  
AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein...    27   8.5  
AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical ...    27   8.5  
AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal chem...    27   8.5  

>U78092-1|AAB36684.1|  297|Caenorhabditis elegans LIN-7 protein.
          Length = 297

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +3

Query: 153 RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 323
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 324 WDHTWVQRMYKGRYDQTIYKKYYNV 398
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AL034488-17|CAA22459.2|  316|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10b protein.
          Length = 316

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +3

Query: 153 RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 323
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 324 WDHTWVQRMYKGRYDQTIYKKYYNV 398
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AL034488-16|CAN99708.1|  317|Caenorhabditis elegans Hypothetical
           protein Y54G11A.10a protein.
          Length = 317

 Score = 36.7 bits (81), Expect = 0.010
 Identities = 26/85 (30%), Positives = 43/85 (50%), Gaps = 3/85 (3%)
 Frame = +3

Query: 153 RGWKVQDGHFVQAGHMLATQRTTRFHPGLNVGFGVNGTLFAMEA---GKVVVTCEKFDPN 323
           RG   +DG  V+   +L  Q    +HPGLNV +  +     + A   G V ++ EK DP+
Sbjct: 26  RGIFRKDGEVVRKDDLLVNQFKMNYHPGLNVYYENDRGERLLRAHCDGIVRISQEKCDPD 85

Query: 324 WDHTWVQRMYKGRYDQTIYKKYYNV 398
           ++     + Y+ R D  +YK  +N+
Sbjct: 86  YE-IEEMKGYEYRKDVDLYKMTFNM 109


>AF067949-10|AAC19239.4|  304|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform a protein.
          Length = 304

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 437 INKFKSLMLGLWYNIVIFFIDGLVIAPFVH 348
           I +++ LML + +  +I+ I G V+ PFVH
Sbjct: 21  IGRYRYLMLYISFFEIIYCIAGKVVRPFVH 50


>AF067949-9|AAX22283.1|  323|Caenorhabditis elegans Seven tm
           receptor protein 180,isoform b protein.
          Length = 323

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 12/30 (40%), Positives = 20/30 (66%)
 Frame = -1

Query: 437 INKFKSLMLGLWYNIVIFFIDGLVIAPFVH 348
           I +++ LML + +  +I+ I G V+ PFVH
Sbjct: 40  IGRYRYLMLYISFFEIIYCIAGKVVRPFVH 69


>Z81540-10|CAB04398.1|  354|Caenorhabditis elegans Hypothetical
           protein F46B3.9 protein.
          Length = 354

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 12/31 (38%), Positives = 15/31 (48%)
 Frame = -3

Query: 393 CNIFYRWSGHSALCTSSGPKCDPSLDQTFHM 301
           CNI     G +    +  PKC P LDQ  H+
Sbjct: 147 CNIKQCPKGQNCKLVNGSPKCVPELDQCSHI 177


>AF016683-8|AAM97998.1|  480|Caenorhabditis elegans Hypothetical
           protein K09F6.10 protein.
          Length = 480

 Score = 27.9 bits (59), Expect = 4.8
 Identities = 10/35 (28%), Positives = 20/35 (57%)
 Frame = +3

Query: 81  FVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFV 185
           F+R+  +K GG+ + T   +  KH  ++  DG ++
Sbjct: 94  FIRSMIQKAGGNLETTEYWLNLKHEAYEEDDGFWI 128


>Z83223-3|CAB05717.2|  385|Caenorhabditis elegans Hypothetical
           protein E01G4.5 protein.
          Length = 385

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +3

Query: 81  FVRNASKKTGGSTQNTNCKVKPKHRGWKVQDGHFVQ 188
           F+R   +K  G  ++T   +   H G++  +GH VQ
Sbjct: 28  FIRGVIQKAEGDLEHTKFWLNLTHSGYEEGEGHHVQ 63


>AJ011523-1|CAB38019.1|  760|Caenorhabditis elegans CHE-2 protein
           protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +3

Query: 228 HPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKG 359
           +P  ++ +  +GTLFA+ +  ++  C+K    W H+ +++M  G
Sbjct: 228 YPITSISWNTDGTLFAVGSHNILRLCDK--SGWSHS-LEKMNAG 268


>AF038619-1|AAB92076.2|  468|Caenorhabditis elegans Hypothetical
           protein F56A11.4 protein.
          Length = 468

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -1

Query: 173 ILYFPPSVLWFYFTISILRTTSGFF 99
           +L FP S++W YF + +L T   F+
Sbjct: 123 MLIFPASLVWDYFRVELLYTCWHFY 147


>AC006635-2|AAK68383.1|  760|Caenorhabditis elegans Abnormal
           chemotaxis protein 2 protein.
          Length = 760

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 12/44 (27%), Positives = 26/44 (59%)
 Frame = +3

Query: 228 HPGLNVGFGVNGTLFAMEAGKVVVTCEKFDPNWDHTWVQRMYKG 359
           +P  ++ +  +GTLFA+ +  ++  C+K    W H+ +++M  G
Sbjct: 228 YPITSISWNTDGTLFAVGSHNILRLCDK--SGWSHS-LEKMNAG 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,558,555
Number of Sequences: 27780
Number of extensions: 246558
Number of successful extensions: 730
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 730
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1060113800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)