Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E04
         (744 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein Nop10|Sc...    85   8e-18
SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogam...    26   6.5  

>SPAP27G11.13c |nop10||small nucleolar ribonucleoprotein
           Nop10|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 64

 Score = 85.4 bits (202), Expect = 8e-18
 Identities = 38/60 (63%), Positives = 46/60 (76%)
 Frame = +1

Query: 112 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 291
           M+L YYLND+G R YTL  + P G+ T S+HPARFSP+DKYSR R  +KKRF +LLTQ P
Sbjct: 1   MHLMYYLNDEGKRVYTLKKVSPDGRVTKSSHPARFSPDDKYSRQRYTLKKRFHVLLTQLP 60


>SPAC13C5.03 |tht1||nuclear membrane protein involved in karyogamy
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 543

 Score = 25.8 bits (54), Expect = 6.5
 Identities = 15/42 (35%), Positives = 22/42 (52%)
 Frame = -1

Query: 378 LKIIVKMYQNLDHFGNFQCKSIFILMNRFRLLCKQQAKSLLD 253
           LK +    QNL H    Q KS F+ +++  L   QQ + L+D
Sbjct: 314 LKRLSSEQQNLQHEQILQWKSDFLNVSKDHLKVLQQLRPLID 355


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,885,761
Number of Sequences: 5004
Number of extensions: 56389
Number of successful extensions: 85
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 353266144
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)