Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E04
         (744 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81038-4|CAB02768.2|   64|Caenorhabditis elegans Hypothetical pr...    83   2e-16
AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical ...    31   1.1  

>Z81038-4|CAB02768.2|   64|Caenorhabditis elegans Hypothetical
           protein C25A1.6 protein.
          Length = 64

 Score = 83.0 bits (196), Expect = 2e-16
 Identities = 38/63 (60%), Positives = 49/63 (77%)
 Frame = +1

Query: 112 MYLRYYLNDKGDREYTLATIDPFGKPTLSAHPARFSPEDKYSRHRIIIKKRFGLLLTQQP 291
           M+LRY+L++   R YTL    P G+ TL+AHPARFSPEDK S++RIIIKKRFGLL TQ+ 
Sbjct: 1   MFLRYFLDENQQRVYTLKRTAPSGEQTLTAHPARFSPEDKNSKYRIIIKKRFGLLPTQKA 60

Query: 292 EPI 300
           + +
Sbjct: 61  KTV 63


>AF100305-6|AAC68915.1|  352|Caenorhabditis elegans Hypothetical
           protein W04B5.2 protein.
          Length = 352

 Score = 30.7 bits (66), Expect = 1.1
 Identities = 16/51 (31%), Positives = 24/51 (47%)
 Frame = -1

Query: 441 ISFVRAFVFCCMLYKSCVP*ILKIIVKMYQNLDHFGNFQCKSIFILMNRFR 289
           I+F+   +     YK C    L II  +  +L HF +  C++ F   N FR
Sbjct: 219 INFILFIIIIANKYKKCYKNFLLIIYSLLNSLTHFSSTNCEN-FEKKNSFR 268


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,902,122
Number of Sequences: 27780
Number of extensions: 313988
Number of successful extensions: 533
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 533
length of database: 12,740,198
effective HSP length: 80
effective length of database: 10,517,798
effective search space used: 1756472266
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)