Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E03
         (666 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase prot...    23   2.2  
AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicas...    23   3.0  
AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory recept...    21   9.1  

>AJ876407-1|CAI45288.1|  590|Tribolium castaneum phosphatase
           protein.
          Length = 590

 Score = 23.0 bits (47), Expect = 2.2
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +1

Query: 211 IQLILTSEESFIKHDKAEICFRASANMHSVRDVSS 315
           ++ + T EE+ ++ DKA    RA A  HS  D+ +
Sbjct: 95  LESLATVEETVVR-DKAVESLRAVAQQHSPADLEN 128


>AY887136-1|AAW78361.1|  580|Tribolium castaneum vasa RNA helicase
           protein.
          Length = 580

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 10/47 (21%), Positives = 21/47 (44%)
 Frame = +3

Query: 495 YAQDLEKTGSVIHMPVPSSYNDVGEDASLRDHVGLVWYDRRFHVPPW 635
           Y   + +TG V +    +S+ D  +D +L   +  +    +  +P W
Sbjct: 493 YVHRIGRTGRVGNKGKATSFFDEDQDRNLASDLAKILSQAKQEIPEW 539


>AM292326-1|CAL23138.2|  522|Tribolium castaneum gustatory receptor
           candidate 5 protein.
          Length = 522

 Score = 21.0 bits (42), Expect = 9.1
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = +1

Query: 19  VGRRTRIPISNSKITYRILL 78
           + RRT + +SN+ IT+ I++
Sbjct: 314 LNRRTILGVSNAVITFLIVM 333


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 157,510
Number of Sequences: 336
Number of extensions: 3619
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 122,585
effective HSP length: 55
effective length of database: 104,105
effective search space used: 17281430
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)