Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E03
         (666 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    28   1.1  
SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33 |Schizo...    28   1.4  
SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase Alg6|Schizosac...    27   2.4  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   4.2  
SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|c...    25   7.4  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    25   7.4  
SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyc...    25   7.4  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    25   7.4  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.8  
SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit 1|Schizosacchar...    25   9.8  
SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    25   9.8  
SPBC18H10.15 |ppk23||serine/threonine protein kinase Ppk23|Schiz...    25   9.8  

>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 28.3 bits (60), Expect = 1.1
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = -3

Query: 220 LIESQFYYSNLVTRDIYLFF*RFRILKKNL 131
           L ES   YS+L+T+DI L F  F+++ + L
Sbjct: 346 LFESMLGYSDLLTKDISLIFPDFKLVLQQL 375


>SPCC162.10 |ppk33||serine/threonine protein kinase Ppk33
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 338

 Score = 27.9 bits (59), Expect = 1.4
 Identities = 11/33 (33%), Positives = 19/33 (57%)
 Frame = -1

Query: 369 NFLLYNWLISFELDDSGTTANVTDTMHISRSAK 271
           N LL NW+ + E + + +   ++  +HISR  K
Sbjct: 233 NHLLINWIRASEEEKASSADRLSSALHISRDKK 265


>SPBC342.01c |alg6|SPBC3F6.06c|glucosyltransferase
           Alg6|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 506

 Score = 27.1 bits (57), Expect = 2.4
 Identities = 12/28 (42%), Positives = 17/28 (60%), Gaps = 2/28 (7%)
 Frame = -1

Query: 441 ISHLGFLSXLVSVA--RGYNAPPLLGNF 364
           I  L F+  L+S+    GYN PP+ G+F
Sbjct: 32  IMSLVFMQWLISIGPYSGYNTPPMYGDF 59


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 26.2 bits (55), Expect = 4.2
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 402 LQKPGXLRTLDGIWSFRPSPAD 467
           L +PG + T DG+W +  S  D
Sbjct: 346 LARPGYMATTDGVWPYAYSQCD 367


>SPBC530.11c |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 819

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -1

Query: 327 DSGTTANVTDTMHISRSAKANLGFIMF 247
           DS T AN T    +SR+A+ N+G + +
Sbjct: 399 DSFTNANPTTAPIVSRNAQDNMGMLAY 425


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
            pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 579  ERRLRPRHYMKKAQACVSQSLSFQDLAHTSHFY 481
            +R L  R + K    C+ + L F++  H +H++
Sbjct: 978  QRDLPYRIFPKATYQCIQKPLGFRNYRHIAHYF 1010


>SPCC70.05c |||serine/threonine protein kinase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 781

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 20/65 (30%), Positives = 29/65 (44%), Gaps = 1/65 (1%)
 Frame = -3

Query: 637 HHGGTWNLLSYHTKPTWSRREASSPTS-LYEEGTGMCITEPVFSRSCAYQPFL*PNSGSA 461
           HH G  NLL     P   +  A+SPTS    +G G  I   +  ++ +  P   P +G +
Sbjct: 118 HHSGLKNLLEKAMHP-GHKSNANSPTSESPSKGFGSFINNHILHKNTSSHPSS-PVNGKS 175

Query: 460 GDGRK 446
            D  K
Sbjct: 176 SDIHK 180


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1919

 Score = 25.4 bits (53), Expect = 7.4
 Identities = 9/33 (27%), Positives = 18/33 (54%)
 Frame = -1

Query: 579  ERRLRPRHYMKKAQACVSQSLSFQDLAHTSHFY 481
            +R L  R + K    C+ + L F++  H +H++
Sbjct: 978  QRDLPYRIFPKATYQCIQKPLGFRNYRHIAHYF 1010


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = -1

Query: 534  CVSQSLSFQDLAHTSHFY 481
            C+++  +F DLA   HFY
Sbjct: 1020 CLTEGTTFDDLASLKHFY 1037


>SPCC550.05 |nse1||Smc5-6 complex non-SMC subunit
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 232

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +3

Query: 396 HVLQKPGXLRTLDGIWSF 449
           H  ++ G LR  +GIW+F
Sbjct: 144 HTFERDGWLRQREGIWTF 161


>SPAC17G6.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 402 LQKPGXLRTLDGIWSFRPSPAD 467
           L +PG L T DG+W +  +  D
Sbjct: 351 LVRPGYLATSDGVWPYSYNSCD 372


>SPBC18H10.15 |ppk23||serine/threonine protein kinase
           Ppk23|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 398

 Score = 25.0 bits (52), Expect = 9.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 290 CIVSVTLAVVPLSSSSNEINQLYK 361
           CI +  +   PL S  +E++QLYK
Sbjct: 262 CIFAEMITRTPLFSGKSELDQLYK 285


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,749,593
Number of Sequences: 5004
Number of extensions: 58567
Number of successful extensions: 146
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 303841898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)