Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_E02
(693 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces pombe... 79 8e-16
SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8 |Schizo... 31 0.16
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 29 0.84
SPAC688.11 |end4|sla2|Huntingtin-interacting protein homolog|Sch... 29 0.84
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa... 27 1.9
SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr 3|||Ma... 27 3.4
SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomy... 26 5.9
SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 26 5.9
SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces ... 25 7.9
>SPAC12B10.06c |||DUF339 family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 139
Score = 78.6 bits (185), Expect = 8e-16
Identities = 47/134 (35%), Positives = 73/134 (54%), Gaps = 5/134 (3%)
Frame = +1
Query: 190 LKNVKKVAFSSDTTNNMDTTYMEIPLYDVEK-QQPLEKRKA---RLHYQSRKRGMLENDL 357
L N+ + S+ N M E D+++ + E R A RL YQSRKRG+LE DL
Sbjct: 7 LSNITTLLRSARCMNRMPQLRFEHTKGDLKRVNRSYETRDAMLARLKYQSRKRGILETDL 66
Query: 358 LLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEF-DNEIMDLLKKH 534
LLS FAK ++ + YD+L++ P DWDI YW ++ PE++ +++ L K+
Sbjct: 67 LLSNFAKDQIDKYPVSLLREYDQLLDEP--DWDILYWCSGEREAPEKWKSSQVFKELSKY 124
Query: 535 AKNEDKIALRQPDL 576
+++ LR P+L
Sbjct: 125 CRSQRNHTLRMPEL 138
>SPBC11B10.03 |cog8||Golgi transport complex subunit Cog8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 400
Score = 31.1 bits (67), Expect = 0.16
Identities = 32/139 (23%), Positives = 52/139 (37%)
Frame = +1
Query: 160 TRTLNLAYNALKNVKKVAFSSDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG 339
TR L LK+++ + D MD ++ + + LEKRKA LH Q K
Sbjct: 7 TREWILTLRLLKDLEDMDSIGDNVTEMDAFVRDLTM---KPYAELEKRKAELHAQKLKLV 63
Query: 340 MLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMD 519
LL + L + Q Y L NS +D+ + P + +
Sbjct: 64 QKRQQLLRDNY--NVLVDYARNQDAFYQLLENS-RHDFKELVLHTNQLYEPVKRSQNFLT 120
Query: 520 LLKKHAKNEDKIALRQPDL 576
+ +H ++ + QP L
Sbjct: 121 SISEHYRDAKLMHQVQPQL 139
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 28.7 bits (61), Expect = 0.84
Identities = 18/76 (23%), Positives = 40/76 (52%)
Frame = +1
Query: 322 QSRKRGMLENDLLLSTFAKKYLNGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEF 501
+ + ++ +++ F K++ F K+ + + I S +++ +IF W +++ EE
Sbjct: 191 RKQMESLVPSEVSYDDFWKRF---FWHKEVVQPIKAIQSGNDEEEIFSW-GDERSDEEES 246
Query: 502 DNEIMDLLKKHAKNED 549
DNE ++ KK + ED
Sbjct: 247 DNEQVNDEKKQSSEED 262
>SPAC688.11 |end4|sla2|Huntingtin-interacting protein
homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1092
Score = 28.7 bits (61), Expect = 0.84
Identities = 15/61 (24%), Positives = 30/61 (49%)
Frame = +1
Query: 388 NGFNEKQTMMYDRLINSPSNDWDIFYWIVEKKPTPEEFDNEIMDLLKKHAKNEDKIALRQ 567
NG E + + R ++ P+ ++ Y ++ + +EF ++ K+ KNE +IA
Sbjct: 129 NGTFEYKEYISLRQVDDPNEGYETVYDMMNLQDHIDEFQKQLFSNFKRSNKNECRIAALV 188
Query: 568 P 570
P
Sbjct: 189 P 189
>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 759
Score = 27.5 bits (58), Expect = 1.9
Identities = 13/25 (52%), Positives = 18/25 (72%)
Frame = -1
Query: 573 IGLSECNFIFIFSMFFEKVHNFIVK 499
IGLS NF+ FS FFE + +F++K
Sbjct: 288 IGLS--NFVNSFSSFFELISHFLIK 310
>SPCC126.06 |twf1||twinfilin|Schizosaccharomyces pombe|chr
3|||Manual
Length = 328
Score = 26.6 bits (56), Expect = 3.4
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +1
Query: 487 TPEEFDNEIMDLLKKHAKNEDKIALRQPDLH*NE 588
TPEE D + ++K +K ED+ LRQ +L E
Sbjct: 123 TPEELDYQ--QIMKSLSKQEDQSPLRQDELERKE 154
>SPCC4G3.13c |||CUE domain protein Cue1/4 family|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 215
Score = 25.8 bits (54), Expect = 5.9
Identities = 16/59 (27%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
Frame = +1
Query: 163 RTLNLAYNALKNVKKVAFSSDTTNNMDT-TYMEIPLYDVEKQQPLEKRKARLHYQSRKR 336
R+L YN + SS +T N + ++P E+++ KRK + +RKR
Sbjct: 144 RSLIETYNLSSRISSSDNSSSSTGNEEVRNRSKLPSSKKEREELFRKRKEEMILAARKR 202
>SPAC2C4.10c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 166
Score = 25.8 bits (54), Expect = 5.9
Identities = 27/87 (31%), Positives = 35/87 (40%), Gaps = 5/87 (5%)
Frame = +1
Query: 202 KKVAFSSDTTNNMDTTYMEIPLYDVEKQQPLEKRKARLHYQSRKRG--MLENDL-LLSTF 372
+KV FSS N D+TY K Q L K A L Q K+ +L DL L
Sbjct: 42 EKVKFSSSRFYNKDSTY--------SKDQGLAKESAALELQKLKQENVLLRKDLNNLEQI 93
Query: 373 AKKYLNGFNE--KQTMMYDRLINSPSN 447
+ Y G ++ K Y +N N
Sbjct: 94 SDCYAKGMDDIMKHVATYTATMNERMN 120
>SPBC4C3.09 |||acetylglucosaminyltransferase|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 376
Score = 25.4 bits (53), Expect = 7.9
Identities = 9/24 (37%), Positives = 17/24 (70%)
Frame = -3
Query: 619 RNKFILLTLHFRFNVDRVVGVQFY 548
R+KF+L++L N+ ++G+Q Y
Sbjct: 16 RSKFVLISLILLLNLGLLLGIQIY 39
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,760,528
Number of Sequences: 5004
Number of extensions: 57442
Number of successful extensions: 193
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 321951680
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -