Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_E02
         (693 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    26   0.39 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    26   0.39 
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             24   1.6  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   2.1  
AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamat...    22   4.8  
AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamat...    22   4.8  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 244 YPCCWW 227
           YPCCWW
Sbjct: 486 YPCCWW 491


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.8 bits (54), Expect = 0.39
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = -3

Query: 244 YPCCWW 227
           YPCCWW
Sbjct: 539 YPCCWW 544


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 23.8 bits (49), Expect = 1.6
 Identities = 8/26 (30%), Positives = 18/26 (69%)
 Frame = +1

Query: 277 EKQQPLEKRKARLHYQSRKRGMLEND 354
           ++QQP ++++ +   Q ++RG + ND
Sbjct: 837 QQQQPQQQQQQQQQQQQQQRGPMTND 862


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
            protein.
          Length = 1308

 Score = 23.4 bits (48), Expect = 2.1
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = -3

Query: 655  EQQATNAIITNQRNKFILLTLHFR 584
            +QQ    I+TNQ  K IL T + +
Sbjct: 983  QQQQQQTIVTNQAGKSILQTANIK 1006


>AY463910-1|AAR24352.1|  843|Apis mellifera metabotropic glutamate
           receptor 1 protein.
          Length = 843

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 370 KC*VGDRFLTFLFFAIGNAILLYVSPAVVV 281
           KC + D  ++FLF  + NA+L+ +S    V
Sbjct: 666 KCNIQD--MSFLFSQLYNALLILISTVYAV 693


>AB161181-1|BAD08343.1|  933|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 933

 Score = 22.2 bits (45), Expect = 4.8
 Identities = 11/30 (36%), Positives = 18/30 (60%)
 Frame = -3

Query: 370 KC*VGDRFLTFLFFAIGNAILLYVSPAVVV 281
           KC + D  ++FLF  + NA+L+ +S    V
Sbjct: 756 KCNIQD--MSFLFSQLYNALLILISTVYAV 783


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,653
Number of Sequences: 438
Number of extensions: 3454
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 21195810
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)