Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D24
         (646 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_05_0817 - 27939192-27939584,27940806-27941561                       28   5.5  
08_02_1046 - 23919990-23920183,23920251-23920479,23920624-239210...    27   9.7  
04_04_0964 - 29749624-29749649,29749742-29749945,29750036-297506...    27   9.7  

>03_05_0817 - 27939192-27939584,27940806-27941561
          Length = 382

 Score = 28.3 bits (60), Expect = 5.5
 Identities = 17/38 (44%), Positives = 23/38 (60%)
 Frame = +1

Query: 406 LQSKRRLLSADIGYSLLLRRVL*SHKAPRRLLSRLQES 519
           LQ KR+LL AD G   LLRR     +  RR + R++E+
Sbjct: 8   LQRKRQLLDADFGGRKLLRRA----EIERREMERIREA 41


>08_02_1046 -
           23919990-23920183,23920251-23920479,23920624-23921057,
           23921426-23921567,23922163-23922255,23923132-23923245,
           23924181-23924266,23924458-23924506,23924717-23924783,
           23925550-23925665,23925698-23925821,23926465-23926553,
           23926810-23927061
          Length = 662

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 482 RHHDDCCPDYKKVCSPPQITSVSCEHEQQTYAPDDQVNKGCNL 610
           ++HDD   D K V  P    S +   E Q+   D +VN  C +
Sbjct: 339 QNHDDVPCDRKNVILPSMFPSNNSIQEGQSVCDDIEVNTECQM 381


>04_04_0964 -
           29749624-29749649,29749742-29749945,29750036-29750634,
           29750742-29750826,29750914-29751562,29751568-29751643,
           29753891-29753957,29754097-29754998,29756579-29756790
          Length = 939

 Score = 27.5 bits (58), Expect = 9.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +1

Query: 166 YYFITLNYIELFSKLNNFC*HFWGTKNFR 252
           + + ++NYI     + NF  HFWG  + R
Sbjct: 590 FIWASINYINEVIVMENFNAHFWGVSDMR 618


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,951,528
Number of Sequences: 37544
Number of extensions: 282731
Number of successful extensions: 629
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 618
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1596695220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)