Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D23
         (867 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.      23   4.1  
AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.      23   4.1  
AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax pr...    22   5.4  

>AY800247-1|AAV66724.1|  790|Tribolium castaneum pangolin protein.
          Length = 790

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 159 PLPMCSPPFSITSRHAGSVNSEKSP 85
           P  M  PP+ + S+ AGS+   + P
Sbjct: 139 PAHMGIPPYQLDSKTAGSMGLTRPP 163


>AY800246-1|AAV66723.1|  682|Tribolium castaneum pangolin protein.
          Length = 682

 Score = 22.6 bits (46), Expect = 4.1
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -1

Query: 159 PLPMCSPPFSITSRHAGSVNSEKSP 85
           P  M  PP+ + S+ AGS+   + P
Sbjct: 31  PAHMGIPPYQLDSKTAGSMGLTRPP 55


>AY074761-1|AAL71874.1|  314|Tribolium castaneum ultrabithorax
           protein.
          Length = 314

 Score = 22.2 bits (45), Expect = 5.4
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = +2

Query: 347 CCPENEVKEGIEALAGDLPATAP 415
           C P++ V  G   L G  PA++P
Sbjct: 144 CTPDSRVGYGSVGLVGGDPASSP 166


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 195,724
Number of Sequences: 336
Number of extensions: 4135
Number of successful extensions: 20
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 20
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 23893023
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)