Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D23
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   3.5  
SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyce...    27   4.6  
SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|...    26   6.0  
SPBC1306.01c ||SPBC409.22c|translation elongation factor G|Schiz...    26   6.0  
SPBC18H10.04c |sce3|tif48|translation initiation factor eIF4B|Sc...    26   6.0  

>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 3.5
 Identities = 18/63 (28%), Positives = 28/63 (44%)
 Frame = -1

Query: 693 LVRCRSYSPSRTYNSSASHLLVQCAAVNTCRSVMRTPPQYCSNPYGVIDAIHGHSRGLAG 514
           L+ CRS +  R + +S  +    C   + CR +M  P     +P   I    G S  +A 
Sbjct: 348 LLTCRSSNRFRLFPASTPNSNGLCRNDSKCRFLMILPETIIKSPSSFI----GDSYNIAN 403

Query: 513 LDP 505
           +DP
Sbjct: 404 IDP 406


>SPCC584.13 |||amino acid permease, unknown 14|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 544

 Score = 26.6 bits (56), Expect = 4.6
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +3

Query: 618 PRIVQEDGTPTNYTYDLVNTTCSALTTPALTILKWW 725
           P+   +D TP     D +N TC     P L +L WW
Sbjct: 470 PQFRGKDNTP-----DAMNWTCVVFGGPMLMVLIWW 500


>SPAC1B1.03c |kap95||karyopherin Kap95|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 863

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/21 (57%), Positives = 14/21 (66%)
 Frame = -3

Query: 448 YFQQDFVIFVLRSGSRKISSQ 386
           YF  D+V  +L SG  KISSQ
Sbjct: 824 YFAADWVAALLNSGKTKISSQ 844


>SPBC1306.01c ||SPBC409.22c|translation elongation factor
           G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 770

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +2

Query: 617 AAHCTRRWDADELYVRLGEYDLQRTNDSRSYNFKVVEKIXHPNFXL 754
           A HCT     D++       + Q+T+  +SYN  +++   H +F +
Sbjct: 119 ATHCTWERTVDQIEAN----EKQKTDFEKSYNINIIDTPGHIDFTI 160


>SPBC18H10.04c |sce3|tif48|translation initiation factor
           eIF4B|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 388

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 15/43 (34%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
 Frame = -1

Query: 180 WMNRLVLPLPMCS--PPFSITSRHAGSVNSEKSPSALTKATVK 58
           W+ R  LP    S  P  ++  R + +VN+E +PSA T  + K
Sbjct: 227 WVRRGPLPPRESSERPRLNLKPRSSSNVNTEATPSATTTTSSK 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,432,278
Number of Sequences: 5004
Number of extensions: 69764
Number of successful extensions: 216
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 213
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 216
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)