Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_D22
(741 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_03_0652 - 18424489-18424525,18424639-18424702,18424796-184248... 225 4e-59
11_04_0279 + 15722183-15722273,15722927-15722986,15724053-157243... 205 2e-53
05_06_0163 - 26082276-26082369,26082751-26082814,26082899-260829... 201 5e-52
09_06_0073 + 20687057-20687246,20689004-20689203,20689786-206899... 105 4e-23
08_02_1489 + 27490143-27490365,27490731-27490732,27491606-274916... 94 9e-20
05_01_0158 - 1067721-1067827,1067951-1068008,1068276-1068334,106... 29 3.9
03_02_0917 + 12372122-12372422,12372487-12372524,12373103-123731... 29 3.9
03_06_0563 - 34738732-34738890,34738965-34739009,34739154-347392... 28 6.8
09_02_0561 + 10681056-10682285,10682546-10682764 28 9.0
06_01_0809 - 6100025-6100251,6100456-6100565,6100919-6100986,610... 28 9.0
>04_03_0652 -
18424489-18424525,18424639-18424702,18424796-18424869,
18425809-18425924,18426078-18426343,18427659-18427749
Length = 215
Score = 225 bits (549), Expect = 4e-59
Identities = 106/214 (49%), Positives = 147/214 (68%), Gaps = 3/214 (1%)
Frame = +2
Query: 98 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 277
MN FRL GD +SCAG+S K+Q L+++V+ TRYLD+ T +S YN
Sbjct: 1 MNAFRLAGDMTHIMSVLVLLLKIHTIKSCAGVSLKTQELYALVFATRYLDIFTDFISLYN 60
Query: 278 TVMKLVFIFTSYATIYLM--YVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEV 451
TVMK++F+ +S++ ++ + + + +YD +HDTFR +FL++P F+LALLI+ +FT EV
Sbjct: 61 TVMKMIFLGSSFSIVWYIRRHKMVRRSYDKDHDTFRHQFLVLPCFLLALLIHEKFTFREV 120
Query: 452 LWTFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHY-E 628
+WTFSIYLE+VAILPQL L+ +TR +++T Y+F LG+YRALY+LNW YRY E HY
Sbjct: 121 MWTFSIYLEAVAILPQLVLLQRTRNVDNLTGQYVFFLGAYRALYILNWAYRYFTEPHYVH 180
Query: 629 LIAIISGVVQTILYCDFFYLYITKVLKGKKLQLP 730
I ISG VQT+LY DFFY Y+ + KL LP
Sbjct: 181 WITWISGFVQTLLYADFFYYYLNSLKNNVKLTLP 214
>11_04_0279 +
15722183-15722273,15722927-15722986,15724053-15724318,
15724771-15724886,15725173-15725246,15725330-15725393,
15725473-15725509
Length = 235
Score = 205 bits (501), Expect = 2e-53
Identities = 97/185 (52%), Positives = 132/185 (71%), Gaps = 3/185 (1%)
Frame = +2
Query: 188 GISGKSQILFSVVYTTRYLDLLTTHVSPYNTVMKLVFIFTSYATIYLM--YVKFKATYDH 361
GIS K+Q L+++V+ RYLDL +S YNTVMKLVF+ +S++ ++ M + + TYD
Sbjct: 51 GISLKTQELYALVFAARYLDLFIHFISLYNTVMKLVFLASSFSIVWYMRRHKIVRRTYDK 110
Query: 362 NHDTFRIEFLLIPTFILALLINHEFTVLEVLWTFSIYLESVAILPQLFLVSKTREAESIT 541
+HDTFR FL++P LALLIN FT EV+W FSIYLE+VAILPQL L+ +TR +++T
Sbjct: 111 DHDTFRHHFLVLPCLALALLINERFTFREVMWAFSIYLEAVAILPQLVLLQRTRNIDNLT 170
Query: 542 SHYLFALGSYRALYLLNWVYRYVVESHY-ELIAIISGVVQTILYCDFFYLYITKVLKGKK 718
Y+F LG+YR LY+LNW+YRY E H+ I+ ++G+VQT+LY DFFY YI K
Sbjct: 171 GQYVFFLGAYRVLYILNWIYRYFTEPHFVHWISWVAGIVQTLLYADFFYYYIMSWKNNVK 230
Query: 719 LQLPA 733
L+LPA
Sbjct: 231 LELPA 235
>05_06_0163 -
26082276-26082369,26082751-26082814,26082899-26082972,
26083644-26083759,26084644-26084909,26085002-26085092
Length = 234
Score = 201 bits (490), Expect = 5e-52
Identities = 95/201 (47%), Positives = 133/201 (66%), Gaps = 3/201 (1%)
Frame = +2
Query: 98 MNIFRLLGDXXXXXXXXXXXXXXWKSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN 277
MN FR LGD + ++SC+G+S K+Q L+ +V+ RY+DL T ++S YN
Sbjct: 1 MNAFRFLGDMTHLFSVLVLLLKIYATKSCSGVSRKTQELYMLVFVARYMDLFTDYISLYN 60
Query: 278 TVMKLVFIFTSYATIYLM--YVKFKATYDHNHDTFRIEFLLIPTFILALLINHEFTVLEV 451
+VMK+VFI +S A ++ M + + + TYD + DTFR L+ F+LALL N FT E+
Sbjct: 61 SVMKVVFITSSAAIVWCMRRHPQVRRTYDKDQDTFRHVVLVAAAFVLALLFNERFTFREI 120
Query: 452 LWTFSIYLESVAILPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHY-E 628
W FSIYLE+VAILPQL L+ ++R +++T Y+F LG+YRA Y+LNW+YRY E H+
Sbjct: 121 CWAFSIYLEAVAILPQLVLLQRSRNVDNLTGQYVFFLGAYRAFYILNWIYRYFTEGHHSR 180
Query: 629 LIAIISGVVQTILYCDFFYLY 691
I I+G+VQT LY DFFY Y
Sbjct: 181 WIPWIAGLVQTALYADFFYYY 201
>09_06_0073 +
20687057-20687246,20689004-20689203,20689786-20689926,
20689995-20690075,20690564-20690688,20690763-20690807,
20691853-20691877,20692282-20693073
Length = 532
Score = 105 bits (252), Expect = 4e-23
Identities = 68/204 (33%), Positives = 112/204 (54%), Gaps = 16/204 (7%)
Frame = +2
Query: 170 KSRSCAGISGKSQILFSVVYTTRYLDLLTTHVSPYN--TVMKLVFIFTSYATIYLMYVKF 343
K ++CAG+S KSQ L ++ R L + V Y+ TV+ + + IY++ K
Sbjct: 58 KEKTCAGLSLKSQDLTALFLAVR---LYCSFVMEYDIHTVLDTATLAATLFVIYMIRFKL 114
Query: 344 KATYDHNHDTFRIEFLLIPTFILALLINHEFT---VLEVLWTFSIYLESVAILPQLFLVS 514
+ TY + D F + ++++P +LALLI+ + V + W F +YLE+V++LPQL L+
Sbjct: 115 RPTYMVDKDNFALYYVVVPCAVLALLIHPSTSHNIVNRISWAFCVYLEAVSVLPQLRLMQ 174
Query: 515 KTREAESITSHYLFALGSYRALYLLNWVY-------RYVVESHYEL---IAIISGVVQTI 664
T+ E T+HY+FALG R L +WV R + Y L + ++S +VQT
Sbjct: 175 NTKIVEPFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTF 234
Query: 665 LYCDFFYLYITKVLKGK-KLQLPA 733
+ DF Y Y+ ++ G+ L+LP+
Sbjct: 235 ILADFCYYYVKSLVGGQLVLRLPS 258
>08_02_1489 +
27490143-27490365,27490731-27490732,27491606-27491651,
27491892-27492091,27492505-27492645,27492730-27492810,
27493353-27493477,27493552-27493600
Length = 288
Score = 94.3 bits (224), Expect = 9e-20
Identities = 63/198 (31%), Positives = 106/198 (53%), Gaps = 16/198 (8%)
Frame = +2
Query: 188 GISGKSQILFSVVYTTRYLDLLTTHVSPYN--TVMKLVFIFTSYATIYLMYVKFKATYDH 361
G+S KSQ L ++ R L + V Y+ T++ + + IY++ K ++TY
Sbjct: 91 GLSLKSQDLTALFLAVR---LYCSFVMEYDIHTILDTATLAATLFVIYMIRFKLRSTYML 147
Query: 362 NHDTFRIEFLLIPTFILALLINHEFT---VLEVLWTFSIYLESVAILPQLFLVSKTREAE 532
+ D F + ++++P LALL++ + + + W F +YLE+V++LPQL L+ T+ E
Sbjct: 148 DKDNFALYYVVLPCAGLALLVHPSTSHNIINRISWAFCVYLEAVSVLPQLRLMQNTKIVE 207
Query: 533 SITSHYLFALGSYRALYLLNWVY-------RYVVESHYEL---IAIISGVVQTILYCDFF 682
T+HY+FALG R L +WV R + Y L + ++S +VQT + DF
Sbjct: 208 PFTAHYVFALGVARFLSCAHWVLQVLDTRGRLLTALGYGLWPSMVLLSEIVQTFILADFC 267
Query: 683 YLYITKVLKGK-KLQLPA 733
Y Y+ V G+ L+LP+
Sbjct: 268 YYYVKSVFGGQLVLRLPS 285
>05_01_0158 -
1067721-1067827,1067951-1068008,1068276-1068334,
1069009-1069087,1069177-1069233,1069531-1069580,
1069805-1069886,1070431-1070487,1070741-1070828,
1071171-1071247,1071325-1071443,1071719-1071950
Length = 354
Score = 29.1 bits (62), Expect = 3.9
Identities = 20/68 (29%), Positives = 34/68 (50%)
Frame = +2
Query: 491 LPQLFLVSKTREAESITSHYLFALGSYRALYLLNWVYRYVVESHYELIAIISGVVQTILY 670
+P +F V TR+ + S +FA+ R+LY+L ++ I I+ G + T +
Sbjct: 258 IPAVFGV--TRDPLIVLSSNIFAISGLRSLYVLISESMSELDYLQPAIGIVLGFIGTKMV 315
Query: 671 CDFFYLYI 694
DFF +I
Sbjct: 316 FDFFGYHI 323
>03_02_0917 +
12372122-12372422,12372487-12372524,12373103-12373186,
12373796-12374504,12374641-12374729,12374834-12374903,
12374977-12375060,12375097-12375239,12375337-12375418,
12375605-12375687,12375769-12375835,12376287-12376376,
12377631-12377737,12377862-12377969
Length = 684
Score = 29.1 bits (62), Expect = 3.9
Identities = 12/27 (44%), Positives = 17/27 (62%)
Frame = -3
Query: 388 KFNPECVMVVIIGGLKLDIHQINSCIG 308
K+ PEC V +I L LD+ +I C+G
Sbjct: 364 KYTPECA-VHVIKSLGLDVEKIKKCVG 389
>03_06_0563 -
34738732-34738890,34738965-34739009,34739154-34739201,
34739291-34739386,34739467-34739534,34739633-34739690,
34739783-34739869,34740004-34740051,34740360-34740416,
34740525-34740783,34740877-34741102,34741168-34741275,
34741885-34741987
Length = 453
Score = 28.3 bits (60), Expect = 6.8
Identities = 14/40 (35%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Frame = +1
Query: 442 FGGIVDFFHLFG--ICRYSTSTVPGFKNKRGRKHYLSLSV 555
FGG + +FG IC Y+T V K G+ H + V
Sbjct: 139 FGGETPYSIMFGPDICGYATKKVHAILTKNGKNHLIKKDV 178
>09_02_0561 + 10681056-10682285,10682546-10682764
Length = 482
Score = 27.9 bits (59), Expect = 9.0
Identities = 19/53 (35%), Positives = 31/53 (58%)
Frame = +2
Query: 395 IPTFILALLINHEFTVLEVLWTFSIYLESVAILPQLFLVSKTREAESITSHYL 553
+P+F+LA +HE VL + T S +L++V +PQ+ + EA S+T L
Sbjct: 433 LPSFLLAE--SHEAYVLHPIVTDSTHLKAVTTVPQMAAI---HEAFSLTPENL 480
>06_01_0809 -
6100025-6100251,6100456-6100565,6100919-6100986,
6101108-6101229,6101446-6101527,6101629-6101695,
6102811-6102883,6103032-6103148,6104167-6104259,
6104430-6104495,6105121-6105218,6105917-6106016,
6106486-6106660,6106828-6106894,6107574-6107712,
6107830-6107926,6107992-6108130,6108212-6108363
Length = 663
Score = 27.9 bits (59), Expect = 9.0
Identities = 13/35 (37%), Positives = 19/35 (54%)
Frame = +2
Query: 446 EVLWTFSIYLESVAILPQLFLVSKTREAESITSHY 550
EV+WT S+ + + Q F T+EAE + S Y
Sbjct: 542 EVMWTLSMLRRYIHYVKQHFKPVLTKEAERVISSY 576
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,689,421
Number of Sequences: 37544
Number of extensions: 408317
Number of successful extensions: 761
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 734
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 750
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1957111448
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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