Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_D21
(856 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 30 0.48
SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr... 29 0.64
SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-gluca... 28 1.9
SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15 |Sc... 27 2.6
SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1 |Schizos... 27 4.5
SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6 |Schizosaccharo... 26 5.9
SPAC4F8.11 |||WD repeat protein, human WDR24 family|Schizosaccha... 26 5.9
SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|... 26 7.8
SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr 1|||... 26 7.8
>SPBC1A4.04 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 249
Score = 29.9 bits (64), Expect = 0.48
Identities = 22/79 (27%), Positives = 41/79 (51%), Gaps = 5/79 (6%)
Frame = +2
Query: 458 SLTNAQKFVNSYIPNRRTVQPIQAEPT---QNYFTPAQFLSSQSLPGVGLRYFVPLYLNE 628
+ TN+QK+ + +PN T QP+ A+P+ ++ + P S S P F YL +
Sbjct: 124 NFTNSQKYFANDLPNSLTDQPL-AQPSASQRSTWLPCSAAVSTSSPSSD--PFFDSYLEQ 180
Query: 629 --QKIEKSKQDDSKLNRIE 679
+K E+ + K++++E
Sbjct: 181 AFEKAERLANEQQKISKVE 199
>SPCC63.05 |||TAP42 family protein |Schizosaccharomyces pombe|chr
3|||Manual
Length = 323
Score = 29.5 bits (63), Expect = 0.64
Identities = 20/91 (21%), Positives = 35/91 (38%)
Frame = +2
Query: 500 NRRTVQPIQAEPTQNYFTPAQFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIE 679
N R +QP +N F +LP + + ++ + I K + K + +
Sbjct: 228 NNRPLQPFTIVSDRNETRKNVFGFGYNLPTMTVDEYLDEEMKRGNIISQKDNPPKSDSDD 287
Query: 680 TDQVDETSKYSASDSQWKYXKEAAKRTTXNT 772
D ++ + D W KEA R + NT
Sbjct: 288 EDDYEKLDAKTMKDRYWDEFKEANPRGSGNT 318
>SPCC1281.01 |ags1|mok1, SPCC338.01c, SPCC17A7.01|alpha-1,4-glucan
synthase Ags1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 2410
Score = 27.9 bits (59), Expect = 1.9
Identities = 18/77 (23%), Positives = 33/77 (42%)
Frame = +2
Query: 590 VGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYXKEAAKRTTXN 769
+GL+ L++NE ++ L+ +T D + +S + + +T
Sbjct: 1916 LGLQKPNKLHVNELSSHSGTEESESLSNGQTSYDDIIAM--TDESNYTQLGDDDFKTIHG 1973
Query: 770 TQEVETFPIYQWPIYII 820
++ F IY WPIY I
Sbjct: 1974 LKKFMLFKIYDWPIYSI 1990
>SPBC146.01 |med15|SPBP35G2.15|mediator complex subunit Med15
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1063
Score = 27.5 bits (58), Expect = 2.6
Identities = 19/54 (35%), Positives = 27/54 (50%)
Frame = +2
Query: 374 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQPIQAEP 535
N Q +PQP Q + P AP +S +N + +N IPN + P QA+P
Sbjct: 732 NQQQQPQPQSQQQQQAS---QFPQAPSVS-SNVRP-INGSIPNAQPSVPGQAQP 780
>SPCC1902.01 |gaf1|SPCC417.01c|transcription factor Gaf1
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 4.5
Identities = 10/16 (62%), Positives = 11/16 (68%)
Frame = +2
Query: 365 PDPNAQWRPQPFKSQP 412
PDPNA RP +SQP
Sbjct: 169 PDPNAMQRPHDLESQP 184
>SPAC1F3.01 |rrp6|SPAC3H8.11|exosome subunit Rrp6
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 777
Score = 26.2 bits (55), Expect = 5.9
Identities = 29/109 (26%), Positives = 45/109 (41%), Gaps = 8/109 (7%)
Frame = +2
Query: 482 VNSYIPNRRTVQPIQAEPTQNYFTPAQFLSSQSLPGV-GLRYFVPLYLNEQKIEKSKQDD 658
VN IP T+ Q ++ + P + G + P+ + + + K K+D
Sbjct: 600 VNQNIPFSLTLPCTQGHVESELNVKQSTVTEAANPSLNGEKKQEPIVIRDLGLNKQKRDS 659
Query: 659 SKLNR------IETDQVD-ETSKYSASDSQWKYXKEAAKRTTXNTQEVE 784
SKLN IE D E S+ S S S+ + K+ K + T E E
Sbjct: 660 SKLNHKEPSNPIEERNEDIEPSEASTSVSKKRKQKKKKKNSGKLTIEAE 708
>SPAC4F8.11 |||WD repeat protein, human WDR24
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 846
Score = 26.2 bits (55), Expect = 5.9
Identities = 9/27 (33%), Positives = 15/27 (55%)
Frame = -1
Query: 415 SRLRFEGLGSPLSVGVWCVVRPFFPYR 335
++L L ++ VW + RP+ PYR
Sbjct: 283 NQLASSSLVGDTAINVWDITRPYIPYR 309
>SPAC27D7.08c |||DUF890 family protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 385
Score = 25.8 bits (54), Expect = 7.8
Identities = 8/20 (40%), Positives = 13/20 (65%)
Frame = +3
Query: 489 PTYQTDEQFSQYRQNPPKTI 548
P Y+ +E F ++QNPP +
Sbjct: 157 PFYEHEEDFINFKQNPPSGV 176
>SPAC167.05 ||SPAC57A7.01|Usp |Schizosaccharomyces pombe|chr
1|||Manual
Length = 601
Score = 25.8 bits (54), Expect = 7.8
Identities = 19/69 (27%), Positives = 29/69 (42%), Gaps = 1/69 (1%)
Frame = +2
Query: 518 PIQAEPTQNYFTPAQFLS-SQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVD 694
P+ A N + Q S SQ +P ++ PL+LN +DS L+ D
Sbjct: 230 PVSATNEANKLSDIQTSSPSQDIPA---KHLEPLHLNRSLSSSPSSEDSDLSLSSDSDDD 286
Query: 695 ETSKYSASD 721
E + S S+
Sbjct: 287 EKKQPSKSE 295
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,240,437
Number of Sequences: 5004
Number of extensions: 63220
Number of successful extensions: 198
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 189
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 198
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 424464280
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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