Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D21
         (856 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,351...    29   3.6  
05_03_0458 + 14280953-14281866,14281964-14282912                       29   3.6  
01_01_0710 + 5492389-5492745,5493664-5493948,5494121-5494438,549...    29   3.6  
03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435     29   4.7  
05_02_0160 - 7194699-7195019,7195207-7195368,7195806-7195953,719...    29   6.2  
11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415     28   8.3  

>12_01_0445 - 3513733-3513819,3514392-3514613,3514730-3514999,
            3515033-3517110,3517649-3517976,3519136-3519255,
            3519299-3519352,3520115-3520154,3520344-3520411
          Length = 1088

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 19/46 (41%), Positives = 26/46 (56%), Gaps = 3/46 (6%)
 Frame = +2

Query: 626  EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYXK---EAAK 754
            E +IE + QD+ KLN   +  VD T+K  A  S+ +  K   EAAK
Sbjct: 880  ESEIESAHQDNRKLNDKVSSAVDFTAKEEAMQSERRAMKQQLEAAK 925


>05_03_0458 + 14280953-14281866,14281964-14282912
          Length = 620

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 28/104 (26%), Positives = 42/104 (40%), Gaps = 3/104 (2%)
 Frame = +2

Query: 353 SNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSY--IPNRRTVQPIQ 526
           S+  P P  Q  P P    P  T    + PT PP          +S   +P  R+    +
Sbjct: 63  SSPPPLPPLQPTPPPL---PPTTLSCSSHPTPPPPPSPTTSPSASSLPPVPTPRSASSSK 119

Query: 527 AEPTQNYFTPAQFLSSQSLPGVGLRYFVPL-YLNEQKIEKSKQD 655
                +  TP +FLSS S P    R+  P+ +   +KI+ +  D
Sbjct: 120 CSAPTSAQTPTRFLSSSSPPPDAPRHLSPVAHALLEKIDLNSHD 163


>01_01_0710 +
           5492389-5492745,5493664-5493948,5494121-5494438,
           5494900-5495127,5495884-5495984,5496493-5496604,
           5496654-5496662,5496897-5497340,5497649-5497909
          Length = 704

 Score = 29.5 bits (63), Expect = 3.6
 Identities = 10/31 (32%), Positives = 20/31 (64%)
 Frame = +1

Query: 496 TKPTNSSANTGRTHPKLFHTSPILKFSKPTR 588
           T P  SS ++ R + + FH+ P++  +KP++
Sbjct: 504 THPAESSQDSQRVYTRTFHSGPLVNQNKPSK 534


>03_05_0033 - 20048994-20050049,20050131-20050210,20050324-20050435
          Length = 415

 Score = 29.1 bits (62), Expect = 4.7
 Identities = 14/38 (36%), Positives = 23/38 (60%)
 Frame = +2

Query: 395 PFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRR 508
           P  + P  +  +++  T+ PLSLT A   V++ IP+RR
Sbjct: 7   PATAAPAASPALFSASTSRPLSLTAAAAAVSARIPSRR 44


>05_02_0160 -
           7194699-7195019,7195207-7195368,7195806-7195953,
           7196286-7196362,7196717-7196787,7196891-7196977,
           7197662-7198201,7198430-7198439
          Length = 471

 Score = 28.7 bits (61), Expect = 6.2
 Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
 Frame = +2

Query: 599 RYFVPLYLNEQKIEKSKQDDSKLNRIE-TDQVDETSKYSASDSQWKYXKEAAKRTTXNTQ 775
           RYF     ++    +  +D  K  ++  T+  D +S+YSA  S++     A+      TQ
Sbjct: 389 RYFGSYSSSDYDSGQYNEDMKKFRKMAFTNNNDTSSQYSAPTSEYGQIPSASSSEGQQTQ 448

Query: 776 EVET 787
           EVE+
Sbjct: 449 EVES 452


>11_06_0131 - 20416257-20417635,20419525-20419905,20420703-20423415
          Length = 1490

 Score = 28.3 bits (60), Expect = 8.3
 Identities = 20/50 (40%), Positives = 25/50 (50%)
 Frame = -3

Query: 395  AGVSIERWGLVRR*TFLPIPVRERDTAAVEAATAQGPVARWAHPSCRTSP 246
            A V +ERWG +R  T  P  V   D  A E+ T++G   R A    R SP
Sbjct: 1063 ASVMLERWGCLRGST--PANVVADDNTAAESRTSRGQPLRVA--LARASP 1108


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,645,997
Number of Sequences: 37544
Number of extensions: 393471
Number of successful extensions: 1068
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1037
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1068
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2385713652
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)