Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_D21
(856 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical... 32 0.60
Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical pr... 31 0.79
Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical pr... 31 0.79
DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagella... 31 0.79
DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagella... 31 0.79
Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical pr... 30 2.4
DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagella... 30 2.4
U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily ass... 29 4.2
DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein. 29 4.2
Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical pr... 29 5.6
U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical pr... 29 5.6
U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical pr... 29 5.6
U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical pr... 29 5.6
U23524-3|AAC46823.2| 257|Caenorhabditis elegans Mirp k channel ... 29 5.6
U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel ... 29 5.6
U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical pr... 29 5.6
AF541978-1|AAO65851.1| 256|Caenorhabditis elegans MPS-1 protein. 29 5.6
U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical pr... 28 7.4
Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical pr... 28 9.7
AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical ... 28 9.7
AC006750-2|AAO38570.1| 478|Caenorhabditis elegans Hypothetical ... 28 9.7
AC006750-1|AAF60535.1| 527|Caenorhabditis elegans Hypothetical ... 28 9.7
AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric ... 28 9.7
AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric ... 28 9.7
>AL132904-10|CAC35843.2| 1481|Caenorhabditis elegans Hypothetical
protein Y111B2A.14 protein.
Length = 1481
Score = 31.9 bits (69), Expect = 0.60
Identities = 16/53 (30%), Positives = 27/53 (50%)
Frame = +2
Query: 626 EQKIEKSKQDDSKLNRIETDQVDETSKYSASDSQWKYXKEAAKRTTXNTQEVE 784
E+K++K K+ ++ +RIE + +E K + K KE KR +E E
Sbjct: 973 EEKLKKEKEKQAEKDRIEAKKFEERMKKEQEKQEEKERKEREKREEKERKERE 1025
>Z50028-3|CAL36518.1| 320|Caenorhabditis elegans Hypothetical
protein F46F6.4c protein.
Length = 320
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 341 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 520
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 62
Query: 521 IQAEPTQNYFTPAQFLSSQS 580
I ++P QN A L S
Sbjct: 63 I-SDPLQNLIRRASRLEDDS 81
>Z50028-1|CAL36517.1| 471|Caenorhabditis elegans Hypothetical
protein F46F6.4a protein.
Length = 471
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 341 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 520
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 158 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 213
Query: 521 IQAEPTQNYFTPAQFLSSQS 580
I ++P QN A L S
Sbjct: 214 I-SDPLQNLIRRASRLEDDS 232
>DQ360813-1|ABC88650.1| 320|Caenorhabditis elegans intraflagellar
transport proteinvariant b protein.
Length = 320
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 341 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 520
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 62
Query: 521 IQAEPTQNYFTPAQFLSSQS 580
I ++P QN A L S
Sbjct: 63 I-SDPLQNLIRRASRLEDDS 81
>DQ360812-1|ABC88649.1| 474|Caenorhabditis elegans intraflagellar
transport proteinvariant a protein.
Length = 474
Score = 31.5 bits (68), Expect = 0.79
Identities = 25/80 (31%), Positives = 32/80 (40%)
Frame = +2
Query: 341 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNRRTVQP 520
+EE ND DP Q P P S P YT T PP + + S N ++
Sbjct: 161 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPPRASAGSNMRQESM--NELIMRK 216
Query: 521 IQAEPTQNYFTPAQFLSSQS 580
I ++P QN A L S
Sbjct: 217 I-SDPLQNLIRRASRLEDDS 235
>Z50028-4|CAL36519.1| 298|Caenorhabditis elegans Hypothetical
protein F46F6.4d protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 341 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 454
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>DQ365983-1|ABD14368.1| 298|Caenorhabditis elegans intraflagellar
transport proteinvariant c protein.
Length = 298
Score = 29.9 bits (64), Expect = 2.4
Identities = 16/38 (42%), Positives = 17/38 (44%)
Frame = +2
Query: 341 WEERSNDAPDPNAQWRPQPFKSQPRYTHIVYNVPTAPP 454
+EE ND DP Q P P S P YT T PP
Sbjct: 7 FEEEFNDLADPQVQ--PPPMGSPPAYTSADEGPKTPPP 42
>U80447-4|AAB37808.1| 560|Caenorhabditis elegans Temporarily
assigned gene nameprotein 326 protein.
Length = 560
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 626 EQKIEKSKQDDSKLNR-IETDQVDETSKYSASDSQWKYXKEAAKRTTXNTQEVETFPIYQ 802
E++ K K+ D K N+ ++ + D+ S S S+ WK ++++KR +EVE+ P Y+
Sbjct: 283 EKRKNKDKKKDKKKNKKSKSRETDDDSDGSDSEDDWK--EKSSKRI---KREVESSPEYR 337
>DQ645890-1|ABG34266.1| 560|Caenorhabditis elegans CIR-1 protein.
Length = 560
Score = 29.1 bits (62), Expect = 4.2
Identities = 19/60 (31%), Positives = 35/60 (58%), Gaps = 1/60 (1%)
Frame = +2
Query: 626 EQKIEKSKQDDSKLNR-IETDQVDETSKYSASDSQWKYXKEAAKRTTXNTQEVETFPIYQ 802
E++ K K+ D K N+ ++ + D+ S S S+ WK ++++KR +EVE+ P Y+
Sbjct: 283 EKRKNKDKKKDKKKNKKSKSRETDDDSDGSDSEDDWK--EKSSKRI---KREVESSPEYR 337
>Z81134-4|CAB03451.1| 322|Caenorhabditis elegans Hypothetical
protein T28D6.7 protein.
Length = 322
Score = 28.7 bits (61), Expect = 5.6
Identities = 25/82 (30%), Positives = 33/82 (40%), Gaps = 5/82 (6%)
Frame = +2
Query: 554 PAQFLSSQSLPGVGLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDETSKYS-----AS 718
PA FL + G+ L V + + SKQ SKL R+ +V E S Y
Sbjct: 17 PAYFLQKATYSGIKLTRHVAVQEKPRPRVASKQCTSKLMRVNVARVWEDSDYEKVKNLCE 76
Query: 719 DSQWKYXKEAAKRTTXNTQEVE 784
DS+ K T TQ +E
Sbjct: 77 DSEGWVEVYKKKDITICTQNIE 98
>U39853-8|AAQ81277.1| 1609|Caenorhabditis elegans Hypothetical
protein F13B9.1c protein.
Length = 1609
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 362 APDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQK 478
AP P QW P +Q + + + P APP TN Q+
Sbjct: 36 APAPQHQWNP---ATQQQNNYYYHQQPAAPPQQHTNPQQ 71
>U39853-7|AAM54194.1| 1614|Caenorhabditis elegans Hypothetical
protein F13B9.1b protein.
Length = 1614
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 362 APDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQK 478
AP P QW P +Q + + + P APP TN Q+
Sbjct: 36 APAPQHQWNP---ATQQQNNYYYHQQPAAPPQQHTNPQQ 71
>U39853-6|AAM54193.2| 1632|Caenorhabditis elegans Hypothetical
protein F13B9.1a protein.
Length = 1632
Score = 28.7 bits (61), Expect = 5.6
Identities = 14/39 (35%), Positives = 19/39 (48%)
Frame = +2
Query: 362 APDPNAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQK 478
AP P QW P +Q + + + P APP TN Q+
Sbjct: 36 APAPQHQWNP---ATQQQNNYYYHQQPAAPPQQHTNPQQ 71
>U23524-3|AAC46823.2| 257|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 1, isoform a protein.
Length = 257
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 374 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNR 505
+++W+P P ++PR + + V + P + +A ++S PNR
Sbjct: 125 DSEWKPLPNGTRPRGHYSISTVTSDIPEIVVSADDCIHSDFPNR 168
>U23524-2|ABD63241.1| 303|Caenorhabditis elegans Mirp k channel
accessory subunitprotein 1, isoform b protein.
Length = 303
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 374 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNR 505
+++W+P P ++PR + + V + P + +A ++S PNR
Sbjct: 125 DSEWKPLPNGTRPRGHYSISTVTSDIPEIVVSADDCIHSDFPNR 168
>U21322-3|AAA62541.1| 1425|Caenorhabditis elegans Hypothetical protein
K10D2.3 protein.
Length = 1425
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = +2
Query: 83 SEFDYRNFDVTCERNKGLKRMRK 151
S FD+RNF V C R L +M K
Sbjct: 1258 SRFDFRNFVVQCRREMILSKMEK 1280
>AF541978-1|AAO65851.1| 256|Caenorhabditis elegans MPS-1 protein.
Length = 256
Score = 28.7 bits (61), Expect = 5.6
Identities = 12/44 (27%), Positives = 25/44 (56%)
Frame = +2
Query: 374 NAQWRPQPFKSQPRYTHIVYNVPTAPPLSLTNAQKFVNSYIPNR 505
+++W+P P ++PR + + V + P + +A ++S PNR
Sbjct: 125 DSEWKPLPNGTRPRGHYSISTVTSDIPEIVVSADDCIHSDFPNR 168
>U41036-5|AAV28332.1| 475|Caenorhabditis elegans Hypothetical
protein T14E8.4 protein.
Length = 475
Score = 28.3 bits (60), Expect = 7.4
Identities = 17/55 (30%), Positives = 30/55 (54%), Gaps = 5/55 (9%)
Frame = +2
Query: 368 DPNAQWRPQPFKSQ---PRYTHIVYNVPTAPPLSLTNAQ--KFVNSYIPNRRTVQ 517
DPN++++P+P SQ P ++ + AP T+ Q K V+ ++PN T +
Sbjct: 240 DPNSKFKPRPTTSQSNGPVIKTVIVDERGAPMNQPTSTQKPKVVHKFLPNPYTTK 294
>Z81523-5|CAB04240.2| 298|Caenorhabditis elegans Hypothetical
protein F32H2.4 protein.
Length = 298
Score = 27.9 bits (59), Expect = 9.7
Identities = 11/29 (37%), Positives = 15/29 (51%)
Frame = +1
Query: 184 DYEVTVADVPDGVRVQCTRHHGEVRHEGW 270
D+ + +A VPDG R +H GE W
Sbjct: 239 DHSIDIAYVPDGSRCHEIKHTGETYSVAW 267
>AF025469-1|AAG00030.3| 578|Caenorhabditis elegans Hypothetical
protein W09B6.3 protein.
Length = 578
Score = 27.9 bits (59), Expect = 9.7
Identities = 14/37 (37%), Positives = 23/37 (62%), Gaps = 1/37 (2%)
Frame = +2
Query: 611 PLYLNEQKIE-KSKQDDSKLNRIETDQVDETSKYSAS 718
P+ +N + + KS + +SKLN IE + E + YS+S
Sbjct: 3 PVLVNSRPLRVKSHESESKLNLIEQEDQFEGANYSSS 39
>AC006750-2|AAO38570.1| 478|Caenorhabditis elegans Hypothetical
protein Y39F10B.1b protein.
Length = 478
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 434 NVPTAPPLSLTNAQK-FVNSYIPNRRTVQPIQAEPTQNYFTP 556
N P+ PP S ++ Q F +S P QP+ A Q+ TP
Sbjct: 262 NGPSRPPSSFSSNQNPFADSISPEAPQAQPVAAARRQSTTTP 303
>AC006750-1|AAF60535.1| 527|Caenorhabditis elegans Hypothetical
protein Y39F10B.1a protein.
Length = 527
Score = 27.9 bits (59), Expect = 9.7
Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
Frame = +2
Query: 434 NVPTAPPLSLTNAQK-FVNSYIPNRRTVQPIQAEPTQNYFTP 556
N P+ PP S ++ Q F +S P QP+ A Q+ TP
Sbjct: 311 NGPSRPPSSFSSNQNPFADSISPEAPQAQPVAAARRQSTTTP 352
>AC006708-26|AAF60419.1| 1724|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform a protein.
Length = 1724
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 536 TQNYFTP-AQFLSSQSLPGV----GLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDET 700
T+ TP A+ LS +++ + G + LN +E++K DD+ +NR + Q D+T
Sbjct: 1449 TEEKSTPNARLLSPKTIKKIRRSLGALIHTEMRLNPPNLEETKIDDTTINR--SKQADKT 1506
Query: 701 SKYSASDSQWKYXKEAAKRTTXNTQEVE 784
+ + + + A K T V+
Sbjct: 1507 EEKTIVEEEPMEEAAAEKTVTAENDHVD 1534
>AC006708-25|AAK68883.1| 1758|Caenorhabditis elegans Holocentric
chromosome bindingprotein protein 6, isoform b protein.
Length = 1758
Score = 27.9 bits (59), Expect = 9.7
Identities = 22/88 (25%), Positives = 41/88 (46%), Gaps = 5/88 (5%)
Frame = +2
Query: 536 TQNYFTP-AQFLSSQSLPGV----GLRYFVPLYLNEQKIEKSKQDDSKLNRIETDQVDET 700
T+ TP A+ LS +++ + G + LN +E++K DD+ +NR + Q D+T
Sbjct: 1449 TEEKSTPNARLLSPKTIKKIRRSLGALIHTEMRLNPPNLEETKIDDTTINR--SKQADKT 1506
Query: 701 SKYSASDSQWKYXKEAAKRTTXNTQEVE 784
+ + + + A K T V+
Sbjct: 1507 EEKTIVEEEPMEEAAAEKTVTAENDHVD 1534
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,901,778
Number of Sequences: 27780
Number of extensions: 354395
Number of successful extensions: 1195
Number of sequences better than 10.0: 24
Number of HSP's better than 10.0 without gapping: 1126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1195
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2129473654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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