Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_D18
(685 letters)
Database: bee
438 sequences; 146,343 total letters
Searching......................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ... 29 0.041
AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein. 26 0.29
DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholi... 25 0.89
DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.89
DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholi... 25 0.89
AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamat... 25 0.89
AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamat... 25 0.89
DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated... 23 2.1
DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholi... 22 4.7
L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein. 21 8.3
DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450 monoo... 21 8.3
>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
protein.
Length = 1124
Score = 29.1 bits (62), Expect = 0.041
Identities = 16/47 (34%), Positives = 26/47 (55%), Gaps = 1/47 (2%)
Frame = -1
Query: 232 ISPPLPPEAIHLPQ-TEKANVKMVDLCPVIIRT*LPVKQSHSRTVLS 95
+S P PP A ++PQ T + + + P+I +PV Q + T+LS
Sbjct: 762 VSIPPPPSAQNVPQNTNSQAIPRIPILPMIPVYCVPVPQVNDSTILS 808
>AB167961-1|BAD51404.1| 554|Apis mellifera E74 protein.
Length = 554
Score = 26.2 bits (55), Expect = 0.29
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 4/45 (8%)
Frame = -2
Query: 237 PSYLHHCHQKQSI--FHKRKRPT--*KWLTYVLSLFELDYQLNNP 115
P + HH HQ QS+ H R+ PT + +YV S++ Q P
Sbjct: 349 PPHHHHHHQTQSLQHLHYRQPPTLSESYSSYVNSMYASGAQFATP 393
>DQ026037-1|AAY87896.1| 431|Apis mellifera nicotinic acetylcholine
receptor alpha9subunit protein.
Length = 431
Score = 24.6 bits (51), Expect = 0.89
Identities = 12/45 (26%), Positives = 20/45 (44%)
Frame = +2
Query: 146 NDRT*VNHFHVGLFRLWKMDCFWWQWWRYDGLGFIYWRSSRFVTP 280
+D T V H + +W W+ +DG+ +IY +S P
Sbjct: 83 DDWTSVMELHSWMTLMWTDSHLSWKPSDFDGINYIYVKSDDIWVP 127
>DQ026034-1|AAY87893.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.89
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -1
Query: 346 EPDDRTVPSRLKAKACMGAVCAGGNEAAGPPVDKSQTIISPPLPPEAIH 200
+ ++ P R ++A + + A G S I PPLPP +H
Sbjct: 399 DSEEHLTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLH 447
>DQ026033-1|AAY87892.1| 569|Apis mellifera nicotinic acetylcholine
receptor alpha4subunit protein.
Length = 569
Score = 24.6 bits (51), Expect = 0.89
Identities = 13/49 (26%), Positives = 21/49 (42%)
Frame = -1
Query: 346 EPDDRTVPSRLKAKACMGAVCAGGNEAAGPPVDKSQTIISPPLPPEAIH 200
+ ++ P R ++A + + A G S I PPLPP +H
Sbjct: 399 DSEEHLTPKRFHSRAASKEDLSPSSLADGARFGGSCLIHGPPLPPLPLH 447
>AY463910-1|AAR24352.1| 843|Apis mellifera metabotropic glutamate
receptor 1 protein.
Length = 843
Score = 24.6 bits (51), Expect = 0.89
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 476 PCKRLAFYKTQFTTCCWHI*EQC 544
PC+ K Q TCCW + +QC
Sbjct: 452 PCEPGMIKKQQGDTCCW-VCDQC 473
>AB161181-1|BAD08343.1| 933|Apis mellifera metabotropic glutamate
receptor protein.
Length = 933
Score = 24.6 bits (51), Expect = 0.89
Identities = 10/23 (43%), Positives = 13/23 (56%)
Frame = +2
Query: 476 PCKRLAFYKTQFTTCCWHI*EQC 544
PC+ K Q TCCW + +QC
Sbjct: 542 PCEPGMIKKQQGDTCCW-VCDQC 563
>DQ667193-1|ABG75745.1| 510|Apis mellifera cys-loop ligand-gated
ion channel subunit protein.
Length = 510
Score = 23.4 bits (48), Expect = 2.1
Identities = 8/19 (42%), Positives = 12/19 (63%)
Frame = +2
Query: 194 WKMDCFWWQWWRYDGLGFI 250
+ MDC++ Q WR L F+
Sbjct: 83 YSMDCYFRQSWRDSRLSFL 101
>DQ026039-1|AAY87898.1| 427|Apis mellifera nicotinic acetylcholine
receptor beta2subunit protein.
Length = 427
Score = 22.2 bits (45), Expect = 4.7
Identities = 10/37 (27%), Positives = 16/37 (43%)
Frame = +2
Query: 170 FHVGLFRLWKMDCFWWQWWRYDGLGFIYWRSSRFVTP 280
FHV L +W+ W+ +D + I +S P
Sbjct: 82 FHVMLKLMWEQSHLTWKSSEFDSINSIRVKSYEIWVP 118
>L10710-1|AAA27730.1| 382|Apis mellifera hyaluronidase protein.
Length = 382
Score = 21.4 bits (43), Expect = 8.3
Identities = 8/21 (38%), Positives = 14/21 (66%)
Frame = -2
Query: 621 NVSVLIFLIFYNVMSLVFHKY 559
N +V F +++NV + + HKY
Sbjct: 37 NKTVREFNVYWNVPTFMCHKY 57
>DQ244075-1|ABB36785.1| 548|Apis mellifera cytochrome P450
monooxygenase protein.
Length = 548
Score = 21.4 bits (43), Expect = 8.3
Identities = 9/31 (29%), Positives = 16/31 (51%)
Frame = -1
Query: 457 DCNRYLSSFGIGLFRVSSMGDSSVMAVKSHN 365
DC+ Y+S + + ++MG S + HN
Sbjct: 177 DCHNYMSELTVDILLETAMGVSK--PTRDHN 205
Database: bee
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 146,343
Number of sequences in database: 438
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 205,604
Number of Sequences: 438
Number of extensions: 4605
Number of successful extensions: 21
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 20830365
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -