Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D17
         (419 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein L37|Schizosac...   108   4e-25
SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein L37|S...   107   9e-25
SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces ...    27   1.6  
SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3 B...    26   2.1  
SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces ...    24   8.4  

>SPAPB17E12.05 |rpl3703|rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 89

 Score =  108 bits (259), Expect = 4e-25
 Identities = 47/81 (58%), Positives = 54/81 (66%)
 Frame = +1

Query: 55  GPSSFGKRRNXXHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXX 234
           G  SFG R N  HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          
Sbjct: 4   GTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGR 63

Query: 235 MRHLKIVRRRFRNGFKEGKPT 297
           M +LK V R F+NGF+ GKPT
Sbjct: 64  MSYLKKVHRSFKNGFRAGKPT 84


>SPCC1223.05c |rpl3702|rpl37-2, rpl37|60S ribosomal protein
           L37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 91

 Score =  107 bits (256), Expect = 9e-25
 Identities = 48/88 (54%), Positives = 55/88 (62%)
 Frame = +1

Query: 55  GPSSFGKRRNXXHTLCRRCGRSSYHIQKSKCAQCGYPAAKLRSYHWSVKAXXXXXXXXXX 234
           G  SFG R N  HT+CRRCG+ S+HIQKS CA CGYPAAK RSY+W  KA          
Sbjct: 4   GTQSFGMRHNKSHTICRRCGKRSFHIQKSTCACCGYPAAKTRSYNWGAKAKRRRTTGTGR 63

Query: 235 MRHLKIVRRRFRNGFKEGKPTPPKKAVA 318
           M +LK V R F+NGF+ GKP     A A
Sbjct: 64  MSYLKKVHRSFKNGFRSGKPAAAVAASA 91


>SPAC144.18 |||nucleotide sugar transporter |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 26.6 bits (56), Expect = 1.6
 Identities = 12/38 (31%), Positives = 19/38 (50%)
 Frame = -1

Query: 254 TIFK*RMRPVPVVFLRLAFTDQW*DRNFAAGYPHWAHF 141
           T+F   +  +PV+ +   FT+ W   N A  +P  A F
Sbjct: 197 TMFYNNLLSIPVLVICTLFTEDWSAENIAQNFPPDAKF 234


>SPCC1919.15 |brl1|SPCC790.01, rfp2|ubiquitin-protein ligase E3
           Brl1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 692

 Score = 26.2 bits (55), Expect = 2.1
 Identities = 10/28 (35%), Positives = 11/28 (39%)
 Frame = +1

Query: 82  NXXHTLCRRCGRSSYHIQKSKCAQCGYP 165
           N  H  C  C    Y  + S C QC  P
Sbjct: 654 NCGHAFCSNCMEPFYEHKTSTCPQCETP 681


>SPAPB1E7.07 |glt1||glutamate synthase Glt1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 2111

 Score = 24.2 bits (50), Expect = 8.4
 Identities = 10/31 (32%), Positives = 13/31 (41%)
 Frame = +1

Query: 73   KRRNXXHTLCRRCGRSSYHIQKSKCAQCGYP 165
            KR N    L  R       +Q ++C  CG P
Sbjct: 1632 KRTNDWKELSVRLREDELRVQTARCMDCGTP 1662


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,354,489
Number of Sequences: 5004
Number of extensions: 23470
Number of successful extensions: 44
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 44
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 44
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 148351622
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)