Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D16
         (764 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces pomb...    30   0.42 
SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyc...    29   0.96 
SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit...    28   1.7  
SPCC63.06 |||human WDR89 family WD repeat protein|Schizosaccharo...    27   2.9  
SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces po...    27   2.9  
SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces...    26   5.1  
SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein homolog|Schi...    26   5.1  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    26   6.8  
SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|c...    26   6.8  
SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr...    26   6.8  
SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr 3|||...    26   6.8  
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual        25   9.0  
SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces pomb...    25   9.0  

>SPCC794.11c |||ENTH domain protein Ent3|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 476

 Score = 29.9 bits (64), Expect = 0.42
 Identities = 29/91 (31%), Positives = 41/91 (45%), Gaps = 6/91 (6%)
 Frame = -2

Query: 394 SAGIDQLKGFDN--SPKMPVADSSRPPK**QNLFSLFFE----PLQNFLNSASIFLGSFF 233
           SA ID L G DN  SP  P  ++S P     + F  F      P  + LN+AS+F+GS  
Sbjct: 274 SAMIDLL-GLDNEPSPAQPQTNTSAPLAFEDDGFGDFQSSAAAPASSTLNNASLFMGS-- 330

Query: 232 TSSDSVAANFSTVFTHTSQSPSRSDRTTCTA 140
            ++ + A N    F     +PS    +   A
Sbjct: 331 QTASTAAKNDDDAFDDFQSAPSAKPASNTAA 361


>SPAC1F5.07c |hem14||protoporphyrinogen oxidase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 490

 Score = 28.7 bits (61), Expect = 0.96
 Identities = 18/66 (27%), Positives = 28/66 (42%), Gaps = 3/66 (4%)
 Frame = +3

Query: 252 IEAEFKKFCKGSKNKENRFCYYLGGLEESATGILGELS---KPLSWSMPADKICEKLKKK 422
           IE +  +    S + +NR+ YY   L E  + ILG +    +P    MP   + E  +K 
Sbjct: 84  IEDKLLRISSNSPSAKNRYIYYPDRLNEIPSSILGSIKSIMQPALRPMPLAMMLEPFRKS 143

Query: 423 DAQICD 440
                D
Sbjct: 144 KRDSTD 149


>SPAC29E6.02 |prp3|SPAC30.06|U4/U6 x U5 tri-snRNP complex subunit
           Prp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 542

 Score = 27.9 bits (59), Expect = 1.7
 Identities = 12/18 (66%), Positives = 13/18 (72%)
 Frame = +3

Query: 219 LSDDVKKDPKKIEAEFKK 272
           L DD  KDP KIEAE +K
Sbjct: 342 LGDDAIKDPTKIEAEVRK 359


>SPCC63.06 |||human WDR89 family WD repeat
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 331

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +3

Query: 216 TLSDDVKKDPKKIEAEFKKFCKGSKNKENRFCYYLGG 326
           T + ++KK+P K+E   ++ C+          YY GG
Sbjct: 285 TSTGELKKEPTKLERASEEICRAISFDVKNDVYYSGG 321


>SPBC1778.09 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 414

 Score = 27.1 bits (57), Expect = 2.9
 Identities = 13/30 (43%), Positives = 20/30 (66%)
 Frame = +3

Query: 381 SMPADKICEKLKKKDAQICDLRFDKQIDLN 470
           S+P  K+ +K  + + QICD  +D QIDL+
Sbjct: 175 SLPDKKLIDKYYQLNEQICD--YDVQIDLD 202


>SPBC1A4.03c |top2|ptr11|DNA topoisomerase II|Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1485

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 13/28 (46%), Positives = 18/28 (64%)
 Frame = +3

Query: 360  LSKPLSWSMPADKICEKLKKKDAQICDL 443
            LS PL WS+  ++  E LKKKD  + +L
Sbjct: 1153 LSMPL-WSLTYERYVELLKKKDEVMAEL 1179


>SPBC21C3.01c |vps13a|vps1301, SPBC31F10.18c|chorein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 3071

 Score = 26.2 bits (55), Expect = 5.1
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = -2

Query: 100 IFDEYLNSCVINLDTSNIKLGMLXYHVSCQKL 5
           + ++ L S V NLDT  + +G+   HVS   L
Sbjct: 9   LLNKILGSYVDNLDTKQLNIGVWGGHVSLHNL 40


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
           Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 7/10 (70%), Positives = 9/10 (90%)
 Frame = +3

Query: 519 NDWDEVCDGC 548
           +DWD+ CDGC
Sbjct: 340 DDWDDSCDGC 349


>SPBC13G1.05 |||DUF747 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 649

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
 Frame = -2

Query: 292 FFEPLQNFLNSASIF----LGSFFTSSDSVAANFSTVFTHTSQSPSRS 161
           +F  + +FL   ++F    L SFFT S  +     + F H + SP+RS
Sbjct: 170 WFVSVDSFLYIFTLFPIRVLISFFTLSRCIFQGLFSTFFHRNSSPNRS 217


>SPAC227.10 |||prefoldin subunit 2 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 114

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 12/34 (35%), Positives = 21/34 (61%)
 Frame = +3

Query: 189 VKTVEKFAATLSDDVKKDPKKIEAEFKKFCKGSK 290
           +KT ++   T  + +    K++EAEF+KF K +K
Sbjct: 75  LKTTQEGIQTAMNGLLDQYKQLEAEFQKFQKDNK 108


>SPCC338.18 |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 117

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 16/30 (53%), Positives = 17/30 (56%)
 Frame = +3

Query: 42  SFILEVSKFITHEFKYSSKMFKFSLFHLLF 131
           S I EVSK     FK+ S   KFSL  LLF
Sbjct: 39  SSIEEVSKEGYQWFKHQSVFLKFSLIVLLF 68


>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 4717

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 12/55 (21%), Positives = 25/55 (45%)
 Frame = +3

Query: 519  NDWDEVCDGCIEKTDFIKRIEELKPKYMGRSDL*TKKIH*VNYQHSHCDINIMXT 683
            +DWD + D       ++ +   L P Y+ + D    K+  V + ++   + +M T
Sbjct: 3399 HDWDSLLDTENNSAMWVAKKVNLSPSYIEKMDTEIMKLVPVRFSNTPTTLRLMWT 3453


>SPCC24B10.11c |||THO complex subunit 7 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 202

 Score = 25.4 bits (53), Expect = 9.0
 Identities = 11/35 (31%), Positives = 20/35 (57%), Gaps = 2/35 (5%)
 Frame = -3

Query: 237 SSHHLIAWRQTSLQFSHTLR--NHLLEVIGPPAQP 139
           +++++ AW      F  TL+  NHL  ++ PP+ P
Sbjct: 142 NANYVKAWNLRKDIFDETLKQMNHLQSILHPPSNP 176


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,838,145
Number of Sequences: 5004
Number of extensions: 54713
Number of successful extensions: 173
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 169
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 173
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 367316502
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)