Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D13
         (354 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.    21   3.7  
AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.    21   3.7  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    20   6.5  
AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory recept...    20   6.5  
DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.        20   8.6  
AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone recepto...    20   8.6  

>AY884062-1|AAX84203.1|  712|Tribolium castaneum laccase 2B protein.
          Length = 712

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 66  ITLHWLFKWHEYSKFF 113
           +TLHW   W   S+++
Sbjct: 197 VTLHWHGVWQRGSQYY 212


>AY884061-1|AAX84202.1|  717|Tribolium castaneum laccase 2A protein.
          Length = 717

 Score = 21.0 bits (42), Expect = 3.7
 Identities = 6/16 (37%), Positives = 10/16 (62%)
 Frame = +3

Query: 66  ITLHWLFKWHEYSKFF 113
           +TLHW   W   S+++
Sbjct: 197 VTLHWHGVWQRGSQYY 212


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 6/8 (75%), Positives = 7/8 (87%)
 Frame = -3

Query: 103  EYSCHLNN 80
            EYSCH+ N
Sbjct: 1373 EYSCHVEN 1380


>AM292355-1|CAL23167.1|  324|Tribolium castaneum gustatory receptor
           candidate 34 protein.
          Length = 324

 Score = 20.2 bits (40), Expect = 6.5
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = -3

Query: 280 YTNRYFVLYIPI*VFFRF 227
           Y+  +FV YI    FFRF
Sbjct: 210 YSTLHFVNYIDDLFFFRF 227


>DQ414247-1|ABD63009.2|  414|Tribolium castaneum paired protein.
          Length = 414

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/14 (42%), Positives = 10/14 (71%)
 Frame = +2

Query: 311 HNLXYNNHASHANY 352
           HN+ +N + SH+ Y
Sbjct: 340 HNIAHNPYPSHSIY 353


>AM295015-1|CAL25730.1|  549|Tribolium castaneum ecdysone receptor
           (isoform A) protein.
          Length = 549

 Score = 19.8 bits (39), Expect = 8.6
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = -3

Query: 112 KNFEYSCHLNNQCNV 68
           KN  Y C   N C +
Sbjct: 218 KNAVYQCKYGNNCEI 232


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,445
Number of Sequences: 336
Number of extensions: 1138
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 122,585
effective HSP length: 50
effective length of database: 105,785
effective search space used:  7087595
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.8 bits)