Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D13
         (354 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0008 + 40389744-40389896,40389967-40390048,40390693-403908...    27   3.2  
08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887     27   4.2  

>01_07_0008 +
           40389744-40389896,40389967-40390048,40390693-40390808,
           40391107-40391195,40391859-40391904,40392248-40392716,
           40392825-40392952,40393182-40393253,40393512-40393885,
           40394005-40394545,40394653-40394952,40395167-40395268
          Length = 823

 Score = 27.5 bits (58), Expect = 3.2
 Identities = 21/65 (32%), Positives = 29/65 (44%), Gaps = 2/65 (3%)
 Frame = +2

Query: 155 LNSLISKFRSIISTAESMRFIYRAKPKKNLNRDV*NKVPISVKIISNGSGF*HN--LXYN 328
           LN  +S+  SII +  + +   R       N+D   KV +S      GSG  H   L +N
Sbjct: 759 LNKAVSRVSSIIDSPVARQQYRRMLKMHKQNKDDDEKVEVSPASHVYGSGSHHMCWLSHN 818

Query: 329 NHASH 343
           N A H
Sbjct: 819 NKAMH 823


>08_02_1421 - 26961716-26963650,26967316-26967942,26969832-26970887
          Length = 1205

 Score = 27.1 bits (57), Expect = 4.2
 Identities = 13/45 (28%), Positives = 26/45 (57%)
 Frame = +2

Query: 158 NSLISKFRSIISTAESMRFIYRAKPKKNLNRDV*NKVPISVKIIS 292
           N  + +  +++ST E  + I RAK K ++ + + N+V    ++IS
Sbjct: 381 NKKLGRTETMVSTLEESQLIGRAKEKSDIIKLIKNQVSQQSQVIS 425


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,367,891
Number of Sequences: 37544
Number of extensions: 104837
Number of successful extensions: 129
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 128
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 129
length of database: 14,793,348
effective HSP length: 73
effective length of database: 12,052,636
effective search space used: 530315984
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)