Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D13
         (354 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical pr...    27   2.8  
Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical pr...    27   3.8  
Z70285-4|CAL44966.1|  128|Caenorhabditis elegans Hypothetical pr...    27   5.0  
AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical ...    27   5.0  
U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone...    26   6.6  
U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone...    26   6.6  

>Z82069-1|CAB04902.1|  667|Caenorhabditis elegans Hypothetical
           protein W04A8.1 protein.
          Length = 667

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 17/48 (35%), Positives = 26/48 (54%), Gaps = 1/48 (2%)
 Frame = -1

Query: 303 PEPLEIIFTLIGTLFYTSRFRFFLGFAL*INRM-DSAVEIIERNFEIK 163
           PE L+ +FT I T     R R F GF L      ++A+E+ E N +++
Sbjct: 297 PEALQQLFTSISTSSTLRRRRSFTGFVLEHREPGNAALEVQEANNDVR 344


>Z48178-1|CAA88204.1|  471|Caenorhabditis elegans Hypothetical
           protein C05C10.1 protein.
          Length = 471

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 12/36 (33%), Positives = 16/36 (44%)
 Frame = +1

Query: 4   GLCITLFDCRIVN*VNCYERTSRCTGYLNGMNIQSF 111
           G+ I     R    +NC ER   CT YLN +    +
Sbjct: 245 GVMINEIVSRASEKLNCVERGQNCTSYLNKLKFYGY 280


>Z70285-4|CAL44966.1|  128|Caenorhabditis elegans Hypothetical
           protein F56C4.4 protein.
          Length = 128

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 11/23 (47%), Positives = 16/23 (69%)
 Frame = +1

Query: 46  VNCYERTSRCTGYLNGMNIQSFF 114
           +NCY  +    GY+NG +IQ+FF
Sbjct: 27  INCYAGSR---GYINGKHIQNFF 46


>AC006661-7|AAF39888.2| 1427|Caenorhabditis elegans Hypothetical
           protein H20J04.2 protein.
          Length = 1427

 Score = 26.6 bits (56), Expect = 5.0
 Identities = 19/55 (34%), Positives = 27/55 (49%)
 Frame = -1

Query: 303 PEPLEIIFTLIGTLFYTSRFRFFLGFAL*INRMDSAVEIIERNFEIKEFSFREEG 139
           PE LEI+ TLI  L   S+FR  L       R +  VE+     ++K +   +EG
Sbjct: 662 PERLEIVKTLIYQLLTYSKFRGHLE-----QRQNELVELKREQKKLKAWDVGQEG 711


>U97551-2|AAP13776.1|  434|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform b protein.
          Length = 434

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 112 KNFEYSCHLNNQCNV 68
           +N +Y+C  N QCN+
Sbjct: 50  QNLQYTCRFNKQCNI 64


>U97551-1|AAP13775.1|  435|Caenorhabditis elegans Nuclear hormone
           receptor familyprotein 14, isoform a protein.
          Length = 435

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 7/15 (46%), Positives = 11/15 (73%)
 Frame = -3

Query: 112 KNFEYSCHLNNQCNV 68
           +N +Y+C  N QCN+
Sbjct: 50  QNLQYTCRFNKQCNI 64


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,882,245
Number of Sequences: 27780
Number of extensions: 110291
Number of successful extensions: 192
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 192
length of database: 12,740,198
effective HSP length: 73
effective length of database: 10,712,258
effective search space used: 471339352
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)