Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_D10
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_01_0080 + 644021-645463 30 2.7
04_04_0961 + 29715938-29716034,29716918-29717133,29717438-297177... 29 3.6
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 29 4.8
06_03_0947 + 26248378-26248494,26248600-26248764,26248843-262489... 29 4.8
05_02_0052 + 6124880-6124956,6125097-6125250,6125327-6125920,612... 29 4.8
07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660 29 6.3
05_07_0141 - 27985539-27985609,27985692-27985749,27986249-279862... 29 6.3
06_03_0157 + 17337641-17337896,17337975-17338082,17338643-173389... 28 8.4
06_03_0020 + 15515768-15517696 28 8.4
>06_01_0080 + 644021-645463
Length = 480
Score = 29.9 bits (64), Expect = 2.7
Identities = 17/65 (26%), Positives = 31/65 (47%)
Frame = +2
Query: 425 MTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAIPI 604
+T +GK GS +K+VH E + E D+ +SV + +++ +E +
Sbjct: 173 VTYIGKGGSGNFVKMVHNGIEYGDMQLISEAYDVLKSVGKLTNSELQQVFSEWNKGELLS 232
Query: 605 FLQDI 619
FL +I
Sbjct: 233 FLIEI 237
>04_04_0961 +
29715938-29716034,29716918-29717133,29717438-29717776,
29718247-29719274,29719465-29719551,29719636-29720043,
29720394-29720558,29720742-29721036,29721131-29721345,
29721838-29722143,29722474-29722537,29722644-29722883,
29722959-29723062
Length = 1187
Score = 29.5 bits (63), Expect = 3.6
Identities = 17/70 (24%), Positives = 33/70 (47%)
Frame = +2
Query: 419 NAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSLFMAANVRKSVAEGRSDAI 598
+A+ E+ ++ + DI++ H + +P KD+ V M + V G+S +
Sbjct: 381 DAVIEIPRNDTEYDIEIDHGIFSWELETTSPTLKDVELKVKRGMKVAICGMVGSGKSSLL 440
Query: 599 PIFLQDIPKL 628
L ++PKL
Sbjct: 441 SSILGEMPKL 450
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 29.1 bits (62), Expect = 4.8
Identities = 18/52 (34%), Positives = 28/52 (53%), Gaps = 4/52 (7%)
Frame = -1
Query: 501 YAASFSVCIWTTLMSRNDPLF---PTSVMA-LRRGTGVAAAPWANTVSPDLR 358
+ + F +C+WT R+D +F P S+ A L+RG + WA +PD R
Sbjct: 341 FQSFFLLCLWTLWNHRHDVVFRERPPSISACLQRGLSESTL-WAAMFTPDDR 391
>06_03_0947 +
26248378-26248494,26248600-26248764,26248843-26248952,
26249065-26249179,26249310-26249408,26249485-26249694,
26249802-26250965
Length = 659
Score = 29.1 bits (62), Expect = 4.8
Identities = 11/31 (35%), Positives = 14/31 (45%)
Frame = +1
Query: 613 GHPQAIPQEDHPARHRSYPGVSPRQPWLLQP 705
G + ED+P R P P QPW + P
Sbjct: 486 GFKRPAATEDYPVRTNKIPRPIPEQPWYMNP 516
>05_02_0052 +
6124880-6124956,6125097-6125250,6125327-6125920,
6126344-6126757,6126835-6126846
Length = 416
Score = 29.1 bits (62), Expect = 4.8
Identities = 20/69 (28%), Positives = 31/69 (44%)
Frame = -1
Query: 582 PSATDLRTFAAINNDTDLNMSLHSGVTYAASFSVCIWTTLMSRNDPLFPTSVMALRRGTG 403
PS++ R+F+A T + +S + AA+ + C T + L P A RR +G
Sbjct: 97 PSSSSFRSFSAGTTTTTTSRDDNSSLMLAAAAASCHHQTTEVSSQILLPRPGQAARRSSG 156
Query: 402 VAAAPWANT 376
A A T
Sbjct: 157 GHGAAAAAT 165
>07_03_0629 - 20076676-20080390,20080508-20080576,20081335-20081660
Length = 1369
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/16 (62%), Positives = 13/16 (81%)
Frame = +1
Query: 376 RVRPGRGRHAGASSQC 423
R+RPGRG HA S++C
Sbjct: 35 RLRPGRGTHAACSTKC 50
>05_07_0141 -
27985539-27985609,27985692-27985749,27986249-27986296,
27986455-27986517,27986599-27986722,27990021-27990358
Length = 233
Score = 28.7 bits (61), Expect = 6.3
Identities = 14/54 (25%), Positives = 22/54 (40%)
Frame = +1
Query: 550 GRERPQIXXXXXXXXXXXXPSGHPQAIPQEDHPARHRSYPGVSPRQPWLLQPGH 711
G+ RP++ PQE+ A + Y G+ PR+P L+ H
Sbjct: 124 GQVRPEVDGSDEKVEIANQNEKEVMPSPQEEEAAIKKKYGGIVPRKPALIAKDH 177
>06_03_0157 +
17337641-17337896,17337975-17338082,17338643-17338908,
17339933-17340021,17340095-17340198,17340403-17340508,
17340600-17340675,17340772-17340883,17341719-17342250,
17343097-17343131,17343924-17343984,17344054-17344132,
17344266-17344349
Length = 635
Score = 28.3 bits (60), Expect = 8.4
Identities = 16/49 (32%), Positives = 26/49 (53%)
Frame = +2
Query: 158 VKLNLNNRMSVITKIVPQVSSLHFGKLSSAFLSVKSDRSYFTYTQSLSQ 304
+KL+ + +I+P + L FG + SAF + +D F Y QSL +
Sbjct: 232 IKLHSKLERKKMHRIIP--NRLTFGSVRSAFDDIDADDPDFLYIQSLGE 278
>06_03_0020 + 15515768-15517696
Length = 642
Score = 28.3 bits (60), Expect = 8.4
Identities = 15/54 (27%), Positives = 23/54 (42%)
Frame = +2
Query: 383 AQGAAATPVPLLNAMTEVGKSGSLRDIKVVHMHTEKDAAYVTPECKDIFRSVSL 544
A G A PV + + + G+ D +++H H P C +F S SL
Sbjct: 60 AAGLTADPVAVSRLIKLCVRHGTPSDGRLIHRHVFGGGDVAAPSCSSLFVSNSL 113
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 23,589,896
Number of Sequences: 37544
Number of extensions: 500052
Number of successful extensions: 1430
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 1364
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1430
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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