Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_D09
(766 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_02_0297 - 13891954-13892556,13893019-13893855,13894179-138943... 44 1e-04
07_03_1291 + 25545749-25546262,25546989-25547669,25547693-255477... 41 0.001
07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,177... 40 0.002
02_02_0078 + 6587491-6588021,6588160-6589151,6592430-6592607,659... 33 0.25
01_01_0418 - 3142659-3145622 29 3.1
02_01_0473 - 3403547-3404241,3404455-3404983,3405299-3405477,340... 29 4.1
12_02_0612 - 21134167-21134412 29 5.4
07_03_0166 + 14637891-14638469 28 9.4
06_02_0198 - 12932526-12933032 28 9.4
>06_02_0297 -
13891954-13892556,13893019-13893855,13894179-13894394,
13895455-13895874,13896198-13896506
Length = 794
Score = 44.0 bits (99), Expect = 1e-04
Identities = 27/110 (24%), Positives = 54/110 (49%)
Frame = -2
Query: 468 KCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNN 289
+C S + + LD + A+D ++ ++ V+ +GFP K ++W+ ++ S + N
Sbjct: 443 QCQQSKREIVLLKLDFEKAFDTIEHSAILSVMQHMGFPLKWIEWVQMVFSTASSAVLLNG 502
Query: 288 VFHGPKLAFKGLMQGSSLSPILYNLYTSQIYRHVTELWRK*GRLIPPLLE 139
V +G+ QG LS +L+ L + R + + + + G L P+ E
Sbjct: 503 VPGNSFKCRRGVRQGVPLSLLLFVLGAELLQRIINKAFHQ-GLLSKPINE 551
>07_03_1291 +
25545749-25546262,25546989-25547669,25547693-25547751,
25549152-25549242,25549330-25549743,25550191-25550243,
25550947-25551177,25551492-25551708,25551790-25551890,
25552446-25552532,25553536-25553676,25553839-25553961,
25554070-25554522,25554931-25555308,25555410-25556060,
25556264-25556368,25556482-25556707,25557204-25557241
Length = 1520
Score = 41.1 bits (92), Expect = 0.001
Identities = 25/94 (26%), Positives = 41/94 (43%)
Frame = -2
Query: 474 MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 295
++ C + + LD A+D+V+ L ++L GFP + WI N+ +
Sbjct: 26 IQACHARKCQTLIIKLDFAKAFDSVNWQSLFQILSVKGFPDNWISWIKNLLQTSKSAVLL 85
Query: 294 NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYR 193
+ + KGL QG LSP L+ L + R
Sbjct: 86 HGIPGKWITCKKGLRQGDPLSPYLFILVADVLQR 119
>07_01_0242 + 1775704-1776797,1776839-1777759,1778312-1778412,
1778770-1778900,1779530-1779788,1779823-1780098,
1780100-1781352
Length = 1344
Score = 39.9 bits (89), Expect = 0.002
Identities = 27/94 (28%), Positives = 39/94 (41%)
Frame = -2
Query: 474 MKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKY 295
++ C I V LD A+D+V L ++L GFP + WI + +
Sbjct: 1041 IQACYRRKCQTIIVKLDFTKAFDSVIWSSLFKILAVRGFPENWISWIKGLLSSSKSAVLL 1100
Query: 294 NNVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYR 193
N V KGL+QG LS L+ L + R
Sbjct: 1101 NGVPGRWICCKKGLLQGDPLSSYLFILVADVLQR 1134
>02_02_0078 +
6587491-6588021,6588160-6589151,6592430-6592607,
6592635-6592794,6592992-6593158,6593246-6593869
Length = 883
Score = 33.1 bits (72), Expect = 0.25
Identities = 19/74 (25%), Positives = 31/74 (41%)
Frame = -2
Query: 429 LDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYNNVFHGPKLAFKGLM 250
+D+ AYD ++ L L LGF + + I+ N + +G+
Sbjct: 257 IDMMKAYDRIEWSYLHGCLMRLGFEQDWINTVMRCVTSTRYAIRINGELTDTVVPSRGIR 316
Query: 249 QGSSLSPILYNLYT 208
QG +SP L+ L T
Sbjct: 317 QGDPISPYLFLLCT 330
>01_01_0418 - 3142659-3145622
Length = 987
Score = 29.5 bits (63), Expect = 3.1
Identities = 22/65 (33%), Positives = 32/65 (49%)
Frame = -2
Query: 483 LTDMKKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLY 304
L D C LSG + GA N L +L LY F G++ + +FN+ R +Y
Sbjct: 377 LLDFSNCGLSGKIPSAI-----GAIKN--LKRL--ALYKCNFSGQIPQDLFNLTQLRVIY 427
Query: 303 IKYNN 289
++YNN
Sbjct: 428 LQYNN 432
>02_01_0473 -
3403547-3404241,3404455-3404983,3405299-3405477,
3405868-3405952,3406136-3406482,3407061-3407159,
3408135-3408636
Length = 811
Score = 29.1 bits (62), Expect = 4.1
Identities = 27/97 (27%), Positives = 37/97 (38%)
Frame = -2
Query: 471 KKCLLSGSTAICVFLDVQGAYDNVDLHQLIRVLYSLGFPGKLLKWIFNMYFGRSLYIKYN 292
+KC + LD+ AYD VD L VL +GF KW +
Sbjct: 224 QKCKRENQNFCALKLDLSKAYDRVDWAFLDGVLQRMGFGDTWRKWTMSCV---------- 273
Query: 291 NVFHGPKLAFKGLMQGSSLSPILYNLYTSQIYRHVTE 181
+GL QG LSP L+ L+ + H+ E
Sbjct: 274 -----DICPIRGLRQGDPLSPYLF-LFIADGLSHILE 304
>12_02_0612 - 21134167-21134412
Length = 81
Score = 28.7 bits (61), Expect = 5.4
Identities = 15/39 (38%), Positives = 26/39 (66%)
Frame = +1
Query: 481 QKRADFEA*YKEYRQDQGLYSFLKTKPSQVLQNKKITAS 597
++ A+FEA ++ R DQ L SF++T+ ++Q KIT +
Sbjct: 43 EQMAEFEATLQQAR-DQFLNSFMQTRKGTLVQKYKITTT 80
>07_03_0166 + 14637891-14638469
Length = 192
Score = 27.9 bits (59), Expect = 9.4
Identities = 16/52 (30%), Positives = 28/52 (53%)
Frame = +1
Query: 481 QKRADFEA*YKEYRQDQGLYSFLKTKPSQVLQNKKITASAQVSFHQGAGGAD 636
+++ DFEA ++ QDQ L SF++T+ ++Q K+ A + G D
Sbjct: 45 EQKKDFEAMLQQ-AQDQFLNSFMQTRKGTLVQKYKVKVVADDPGTSSSKGED 95
>06_02_0198 - 12932526-12933032
Length = 168
Score = 27.9 bits (59), Expect = 9.4
Identities = 15/40 (37%), Positives = 25/40 (62%)
Frame = +1
Query: 481 QKRADFEA*YKEYRQDQGLYSFLKTKPSQVLQNKKITASA 600
+K+ +FEA ++ R DQ L SF++T+ ++Q KI A
Sbjct: 43 EKKEEFEATLQQAR-DQFLNSFMQTRKGTLIQKYKIKVVA 81
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,651,653
Number of Sequences: 37544
Number of extensions: 382598
Number of successful extensions: 721
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 708
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 719
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 2051430072
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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