Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D07
         (753 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyce...    54   2e-08
SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme Mms2|Schizos...    28   1.2  
SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|...    28   1.6  
SPAC25B8.04c |||mitochondrial splicing suppressor |Schizosacchar...    27   3.8  
SPAC1250.03 |ubc14||ubiquitin conjugating enzyme Ubc14|Schizosac...    26   5.0  
SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr 1...    26   6.6  
SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit Bgs3|Schizo...    26   6.6  
SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr ...    25   8.8  
SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces pomb...    25   8.8  
SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces po...    25   8.8  
SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr 3||...    25   8.8  
SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr 1|||...    25   8.8  

>SPAC13G6.11c |erg12||mevalonate kinase Erg12 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 404

 Score = 54.4 bits (125), Expect = 2e-08
 Identities = 48/172 (27%), Positives = 80/172 (46%), Gaps = 3/172 (1%)
 Frame = +3

Query: 207 VSAPGKVILHGEHSVVYGKTAIAVSLGLRSSIVIKEVNTPHEPAVHIHLPCV---DLQET 377
           VS+PGK IL GEH+VVYG TA+A ++ LRS   ++  N      V   +      +LQ  
Sbjct: 7   VSSPGKTILFGEHAVVYGATALAAAVSLRSYCKLQTTNNNEIVIVMSDIGTERRWNLQSL 66

Query: 378 IPLEPTVKSLFHPKLAPGITGKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKN 557
                TV+++ HP  +P                          L L++   + L N +  
Sbjct: 67  PWQHVTVENVQHPASSPN-------------------------LDLLQGLGELLKNEENG 101

Query: 558 SLRSFLYVFSGIFGSTYLPVKSMDISMGSELTIGAGTGSSASFAVCLAGALI 713
            + S +     +F S   P +   +++ S++ +GAG GSSA+ +V +A +L+
Sbjct: 102 LIHSAMLCTLYLFTSLSSPSQGCTLTISSQVPLGAGLGSSATISVVVATSLL 153


>SPCC338.05c |mms2|spm2|ubiquitin conjugating enzyme
           Mms2|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 139

 Score = 28.3 bits (60), Expect = 1.2
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 2/88 (2%)
 Frame = +3

Query: 237 GEHSVVYGKT-AIAVSLGLRSSIVIKEVNTPHEPAVH-IHLPCVDLQETIPLEPTVKSLF 410
           GE S  YG T A  ++L   ++ ++   ++ HE  ++ + + C       P  P + +  
Sbjct: 22  GESSCSYGLTNADDITLSDWNATILGPAHSVHENRIYSLKIHC---DANYPDAPPIVTFV 78

Query: 411 HPKLAPGITGKFSWRLPHKIDHDYHLRR 494
                PG+ G+     PHKID   H +R
Sbjct: 79  SRINLPGVDGETGKVNPHKIDCLRHWKR 106


>SPAC3G6.08 |erv1||sulfhydryl oxidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 182

 Score = 27.9 bits (59), Expect = 1.6
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 504 YLHLIKPNFDSLPN-NQKNSLRSFLYVFSGIF 596
           +LH +  NF   P   Q+N + SFLY FS  +
Sbjct: 89  FLHAMAANFPKNPTPTQQNDMSSFLYNFSKFY 120


>SPAC25B8.04c |||mitochondrial splicing suppressor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 3.8
 Identities = 12/33 (36%), Positives = 15/33 (45%)
 Frame = -1

Query: 396 LSAPMEWSPVDPRTANVCGLLVRVECLLPLSLW 298
           L  P+     DPR   +  L    EC LP S+W
Sbjct: 179 LHRPLSAQSTDPRPTRIFVLGATKECSLPPSIW 211


>SPAC1250.03 |ubc14||ubiquitin conjugating enzyme
           Ubc14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 155

 Score = 26.2 bits (55), Expect = 5.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +3

Query: 438 GKFSWRLPHKIDHDYHLRRVEEYLHLIKPNFDSLPN 545
           GKF + L   +D+ +    +E    +  PNFDS  N
Sbjct: 54  GKFHFSLKFPLDYPFQPPTIEFTTRIYHPNFDSEGN 89


>SPAC11E3.14 |||conserved protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 588

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/18 (50%), Positives = 13/18 (72%)
 Frame = +3

Query: 459 PHKIDHDYHLRRVEEYLH 512
           P  IDHD H++R+ E L+
Sbjct: 22  PDPIDHDLHVQRLRELLY 39


>SPAC19B12.03 |bgs3||1,3-beta-glucan synthase subunit
            Bgs3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1826

 Score = 25.8 bits (54), Expect = 6.6
 Identities = 9/35 (25%), Positives = 18/35 (51%)
 Frame = +3

Query: 456  LPHKIDHDYHLRRVEEYLHLIKPNFDSLPNNQKNS 560
            L  K+ + +      ++  L++P+   LPN  KN+
Sbjct: 1790 LDQKLSYQFKFENSVKFFRLMQPSLGVLPNTNKNT 1824


>SPAC11E3.02c |||C2 domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1237

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 633 SMGSELTIGAGTGSSASFAVCLAGALIQLLKLXSLRG 743
           S+ SELT   GT   ++ A  +  + I+L K  +L+G
Sbjct: 147 SVSSELTKRLGTAYDSNLADRITASFIELCKRVTLKG 183


>SPCC1450.12 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 821

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 25/80 (31%), Positives = 35/80 (43%), Gaps = 3/80 (3%)
 Frame = +3

Query: 273 AVSLGLRSSIVIKEVNTPHEPAVHIHLPCVDLQET---IPLEPTVKSLFHPKLAPGITGK 443
           A  LG+R S   K + T     V+ +L  V  +E    I  + +  S FH  L       
Sbjct: 171 AYVLGVRQSTQAKMLRTKR---VYEYLIKVSYEENTFFIARKYSDFSHFHHLLLKSYPNA 227

Query: 444 FSWRLPHKIDHDYHLRRVEE 503
           +  RLP K DHD +L   E+
Sbjct: 228 YVPRLPPKDDHDTYLNSSED 247


>SPCC188.03 |cnd3||condensin subunit Cnd3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 875

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 13/38 (34%), Positives = 17/38 (44%)
 Frame = +3

Query: 477 DYHLRRVEEYLHLIKPNFDSLPNNQKNSLRSFLYVFSG 590
           DY       +LHL    F+SLPN  +   R F+    G
Sbjct: 733 DYIALNHNVHLHLANMIFESLPNASEGKERKFMISLLG 770


>SPCC1450.09c |||phospholipase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 633

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/32 (37%), Positives = 18/32 (56%)
 Frame = +3

Query: 621 SMDISMGSELTIGAGTGSSASFAVCLAGALIQ 716
           ++   M     + A   +S SFAVC+A AL+Q
Sbjct: 548 TLSSGMIENAAVAATQNNSDSFAVCVACALVQ 579


>SPAC1A6.03c |||phospholipase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 624

 Score = 25.4 bits (53), Expect = 8.8
 Identities = 12/21 (57%), Positives = 15/21 (71%)
 Frame = +3

Query: 654 IGAGTGSSASFAVCLAGALIQ 716
           + A   +S SFAVCLA A+IQ
Sbjct: 531 LSATQNNSDSFAVCLACAMIQ 551


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,334,678
Number of Sequences: 5004
Number of extensions: 75529
Number of successful extensions: 237
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 227
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 237
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 359287726
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)