Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D07
         (753 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly pro...    24   1.8  
EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholi...    21   9.4  
DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly pro...    21   9.4  

>AF000632-1|AAC61894.1|  452|Apis mellifera major royal jelly
           protein MRJP2 protein.
          Length = 452

 Score = 23.8 bits (49), Expect = 1.8
 Identities = 13/42 (30%), Positives = 18/42 (42%)
 Frame = +2

Query: 248 GRVRKNCDRCQPRPKELHSDKGSKHSTRTSSPHTFAVRGSTG 373
           G V +    C P+   +   K S H  +   PH  AV  +TG
Sbjct: 142 GLVNRTVPVCAPK-LHVFDLKTSNHLKQIEIPHDIAVNATTG 182


>EF127802-1|ABL67939.1|  461|Apis mellifera nicotinic acetylcholine
           receptor subunitalpha 6 transcript variant 3 protein.
          Length = 461

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = +3

Query: 567 SFLYVFSGIFGST 605
           S LYV  GIFGST
Sbjct: 98  SCLYVPPGIFGST 110


>DQ000307-1|AAY21180.1|  423|Apis mellifera major royal jelly
           protein 9 protein.
          Length = 423

 Score = 21.4 bits (43), Expect = 9.4
 Identities = 8/26 (30%), Positives = 13/26 (50%)
 Frame = +2

Query: 308 KGSKHSTRTSSPHTFAVRGSTGDHSI 385
           K SK   +   PH  A+  +TG  ++
Sbjct: 160 KNSKLLKQVKIPHDIAINSTTGKRNV 185


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 223,713
Number of Sequences: 438
Number of extensions: 5763
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 23632110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)