Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D06
         (423 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor pro...    24   0.81 
DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor pro...    24   0.81 
AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled rec...    24   0.81 
AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex det...    21   4.3  
AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex det...    21   4.3  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    21   5.7  

>DQ863218-1|ABI94394.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 33  FITVYVMFFTEIYFNLITFCSN*CAQ*LLLY*ATILTFVHKM*RNNVYTM 182
           F+  ++ FF  + + ++ FC + C    ++Y  T L +V+      +YT+
Sbjct: 336 FVVCWLPFF--LMYVIVPFCPDCCPSDRMVYFITWLGYVNSALNPLIYTI 383


>DQ863217-1|ABI94393.1|  399|Apis mellifera tyramine receptor
           protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 33  FITVYVMFFTEIYFNLITFCSN*CAQ*LLLY*ATILTFVHKM*RNNVYTM 182
           F+  ++ FF  + + ++ FC + C    ++Y  T L +V+      +YT+
Sbjct: 336 FVVCWLPFF--LMYVIVPFCPDCCPSDRMVYFITWLGYVNSALNPLIYTI 383


>AJ245824-1|CAB76374.1|  399|Apis mellifera G-protein coupled
           receptor protein.
          Length = 399

 Score = 23.8 bits (49), Expect = 0.81
 Identities = 12/50 (24%), Positives = 26/50 (52%)
 Frame = +3

Query: 33  FITVYVMFFTEIYFNLITFCSN*CAQ*LLLY*ATILTFVHKM*RNNVYTM 182
           F+  ++ FF  + + ++ FC + C    ++Y  T L +V+      +YT+
Sbjct: 336 FVVCWLPFF--LMYVIVPFCPDCCPSDRMVYFITWLGYVNSALNPLIYTI 383


>AY569717-1|AAS86670.1|  397|Apis mellifera complementary sex
           determiner protein.
          Length = 397

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 124 YSNNYCAH*LEQNVIKLKYISV 59
           Y+NNY +  L  N+I ++ I V
Sbjct: 314 YNNNYNSKKLYYNIINIEQIPV 335


>AY569712-1|AAS86665.1|  408|Apis mellifera complementary sex
           determiner protein.
          Length = 408

 Score = 21.4 bits (43), Expect = 4.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -3

Query: 124 YSNNYCAH*LEQNVIKLKYISV 59
           Y+NNY +  L  N+I ++ I V
Sbjct: 325 YNNNYNSKKLYYNIINIEQIPV 346


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 5.7
 Identities = 8/14 (57%), Positives = 10/14 (71%)
 Frame = -1

Query: 255 YLKIYFNTDSYKDA 214
           Y  IYF  DS++DA
Sbjct: 436 YQPIYFVADSFEDA 449


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 72,211
Number of Sequences: 438
Number of extensions: 1325
Number of successful extensions: 6
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 52
effective length of database: 123,567
effective search space used: 10873896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)