Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_D02
         (734 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin prot...    23   2.3  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.9  
EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.     22   6.9  

>AB073995-1|BAC76399.1|  301|Apis mellifera preprotachykinin
           protein.
          Length = 301

 Score = 23.4 bits (48), Expect = 2.3
 Identities = 10/19 (52%), Positives = 13/19 (68%)
 Frame = +3

Query: 336 IFGYRGTVENFNMVCVLTL 392
           IFGY+GT  N  +V V T+
Sbjct: 282 IFGYQGTYVNLVIVKVFTI 300


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.9
 Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
 Frame = +2

Query: 527 CKSDKEIEGGEL-RWVKMTNNSSLPMDAIVGGYENEPLYIARAIHFNSLTPGKY 685
           C + K  +G EL ++++  +   L  D        +       IHF  + PGKY
Sbjct: 500 CDAMKPTKGTELLKYLRKVDFEGLSGDKFKFDKNGDGPARYNIIHFKQIEPGKY 553


>EF117814-1|ABO38437.1|  570|Apis mellifera cryptochrome 2 protein.
          Length = 570

 Score = 21.8 bits (44), Expect = 6.9
 Identities = 7/14 (50%), Positives = 8/14 (57%)
 Frame = +2

Query: 320 FIEFKDFWISWHSG 361
           F+   D WISW  G
Sbjct: 381 FLTRGDLWISWEEG 394


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 218,746
Number of Sequences: 438
Number of extensions: 5153
Number of successful extensions: 11
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 56
effective length of database: 121,815
effective search space used: 22901220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)