Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C24
         (712 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical p...    33   0.27 
Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical pr...    30   1.4  
Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical pr...    30   1.4  
AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopam...    30   1.4  
AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopam...    30   1.4  
AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm rece...    29   3.3  

>L15188-11|AAA27954.4| 1226|Caenorhabditis elegans Hypothetical
            protein C14B9.8 protein.
          Length = 1226

 Score = 32.7 bits (71), Expect = 0.27
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 4/68 (5%)
 Frame = -3

Query: 620  KKLYTKNVLTKQELAFQAPQAS----KILNKSNNRDTIM*DM*YTIIVYVTNMSRSEPKI 453
            +K  T  + +K+E     P+ +    KI+N++   D     +   IIVY+ ++ R+EPK+
Sbjct: 872  QKQITVGIASKKEEVITCPKTNEELEKIMNRAYGDDANSFTLAQEIIVYLGSLVRTEPKL 931

Query: 452  FSRFWKSR 429
            F   ++ R
Sbjct: 932  FLEMFRLR 939


>Z81101-6|CAE53732.1|  840|Caenorhabditis elegans Hypothetical
           protein K09G1.4b protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
 Frame = -1

Query: 625 DGRNYT----RRMYSLNRNWPSKHHRRV 554
           DGR+Y+    +R  +L+RN+ +KHHR+V
Sbjct: 460 DGRSYSIKGQKRFRNLSRNYSTKHHRKV 487


>Z81101-5|CAB03199.3|  705|Caenorhabditis elegans Hypothetical
           protein K09G1.4a protein.
          Length = 705

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
 Frame = -1

Query: 625 DGRNYT----RRMYSLNRNWPSKHHRRV 554
           DGR+Y+    +R  +L+RN+ +KHHR+V
Sbjct: 325 DGRSYSIKGQKRFRNLSRNYSTKHHRKV 352


>AB125702-1|BAD01496.1|  705|Caenorhabditis elegans D2-like dopamine
           receptor shortvariant protein.
          Length = 705

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
 Frame = -1

Query: 625 DGRNYT----RRMYSLNRNWPSKHHRRV 554
           DGR+Y+    +R  +L+RN+ +KHHR+V
Sbjct: 325 DGRSYSIKGQKRFRNLSRNYSTKHHRKV 352


>AB125701-1|BAD01495.1|  840|Caenorhabditis elegans D2-like dopamine
           receptor longvariant protein.
          Length = 840

 Score = 30.3 bits (65), Expect = 1.4
 Identities = 13/28 (46%), Positives = 21/28 (75%), Gaps = 4/28 (14%)
 Frame = -1

Query: 625 DGRNYT----RRMYSLNRNWPSKHHRRV 554
           DGR+Y+    +R  +L+RN+ +KHHR+V
Sbjct: 460 DGRSYSIKGQKRFRNLSRNYSTKHHRKV 487


>AF047657-9|AAK18945.1|  329|Caenorhabditis elegans Seven tm
           receptor protein 39 protein.
          Length = 329

 Score = 29.1 bits (62), Expect = 3.3
 Identities = 17/67 (25%), Positives = 35/67 (52%), Gaps = 4/67 (5%)
 Frame = +2

Query: 59  IYYSIFEFKFNK---ITVYNSAKIIAVKTFFTVDFGHCVQKYVCLFCNFKILYAVSERL- 226
           +++ +FEF        T++++  +I + TF+        +K + LF    I++++ ER+ 
Sbjct: 1   MFHKVFEFITVTSFFATLFSNLLLIFITTFYVKQIVGSYKKMIILFAGLGIIFSIVERIA 60

Query: 227 KQNILNY 247
           K  I NY
Sbjct: 61  KPFIHNY 67


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,326,652
Number of Sequences: 27780
Number of extensions: 301288
Number of successful extensions: 784
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 766
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 784
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1655655746
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)