Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C23
         (733 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase |Schizosaccha...    27   3.6  
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha...    25   8.4  

>SPAC3C7.13c |||glucose-6-phosphate 1-dehydrogenase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 473

 Score = 26.6 bits (56), Expect = 3.6
 Identities = 20/81 (24%), Positives = 42/81 (51%)
 Frame = +2

Query: 455 SYNVIKSLYLSVFCQIIITLVFF*MYLSFLVILDM*CKHYHEENFFYILDYVMPKNM*HY 634
           S ++ ++LYL    +++I   F   Y S + + +   KH+ EE   Y +D+   K+M + 
Sbjct: 125 SSHIYENLYLPGKSRLVIEKPFGKNYQSAVKLKEEVHKHWKEEE-IYRIDHYTAKDMVN- 182

Query: 635 TVSVLCYCHLTNIDPICRKNS 697
               L + + ++ID +  ++S
Sbjct: 183 NFFTLRFANSSSIDAVLNRHS 203


>SPBC609.03 |||WD repeat protein, human IQWD1
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 809

 Score = 25.4 bits (53), Expect = 8.4
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 731 YIHNNYMTVLFVNFYGILDQYLSNDSN 651
           Y H N  ++  VNFYG  D+Y+ + S+
Sbjct: 665 YGHCNVESIKNVNFYGQNDEYVMSGSD 691


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,467,029
Number of Sequences: 5004
Number of extensions: 42962
Number of successful extensions: 74
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 74
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 74
length of database: 2,362,478
effective HSP length: 71
effective length of database: 2,007,194
effective search space used: 345237368
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)