Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C23
         (733 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_01_0502 + 4191443-4191769,4191770-4191892,4194161-4194313,419...    32   0.41 
06_01_0969 - 7479567-7479929,7480040-7480326,7485928-7486213,748...    29   5.0  
11_01_0720 - 5943243-5944399,5946142-5946271                           28   6.6  
03_02_0757 - 10940993-10941112,10941218-10941418,10941661-109417...    28   8.8  

>05_01_0502 +
           4191443-4191769,4191770-4191892,4194161-4194313,
           4194420-4194505,4194648-4194732,4194871-4194990,
           4195066-4195134,4195351-4195506
          Length = 372

 Score = 32.3 bits (70), Expect = 0.41
 Identities = 10/29 (34%), Positives = 23/29 (79%)
 Frame = +2

Query: 473 SLYLSVFCQIIITLVFF*MYLSFLVILDM 559
           ++Y ++F +++ T +FF  +++FL++LDM
Sbjct: 62  NIYFNIFNKLVCTYIFFPQFVNFLLLLDM 90


>06_01_0969 -
           7479567-7479929,7480040-7480326,7485928-7486213,
           7486347-7486415
          Length = 334

 Score = 28.7 bits (61), Expect = 5.0
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = -1

Query: 127 LSVNSLLALGKIHIT*TVKQCLNYLEIRIINVGSFLNDI 11
           + +N+LL + K+  T    QC N L   I+ +  FLND+
Sbjct: 59  VGINTLLFVSKVTSTVADAQCHNELGCHIMELQFFLNDL 97


>11_01_0720 - 5943243-5944399,5946142-5946271
          Length = 428

 Score = 28.3 bits (60), Expect = 6.6
 Identities = 10/29 (34%), Positives = 18/29 (62%)
 Frame = +1

Query: 586 FFLYTRLCYAEKYVTLHC*RLMLLSFDKY 672
           F L+   C  ++ V +HC + ++ SFDK+
Sbjct: 7   FLLFLIACVVDRSVNVHCEKQLVSSFDKH 35


>03_02_0757 -
           10940993-10941112,10941218-10941418,10941661-10941795,
           10941948-10942088,10942214-10942405,10942624-10942748,
           10942828-10942903,10943024-10943173,10943467-10943856,
           10944078-10944227,10944430-10944710,10945034-10945230,
           10945836-10946035,10946422-10946469,10946566-10946688,
           10946771-10946882,10946988-10947103,10947526-10947660
          Length = 963

 Score = 27.9 bits (59), Expect = 8.8
 Identities = 9/35 (25%), Positives = 23/35 (65%)
 Frame = -3

Query: 158 LKFYVIL*ISLICEFIASFRKNTHNLNCKTMSKLL 54
           + ++ I  ++++ E + S ++N H L C+T++K +
Sbjct: 84  MAYFAISLVNVLTELLESKQENIHILGCQTLAKFI 118


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,420,280
Number of Sequences: 37544
Number of extensions: 204305
Number of successful extensions: 289
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 287
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 289
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1921741964
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)