Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C22
         (827 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0115 - 19888252-19888406,19888507-19888573,19888867-198891...    29   3.4  
05_01_0180 + 1268129-1268237,1268382-1268731,1268903-1269808,127...    29   6.0  
03_02_0394 - 8081172-8081330,8082015-8082134,8082223-8082271,808...    28   7.9  

>02_04_0115 -
           19888252-19888406,19888507-19888573,19888867-19889101,
           19889179-19889255,19889350-19889415,19889517-19889565,
           19889651-19889701,19889799-19889851,19889973-19890024,
           19890126-19890214,19890308-19890393,19890603-19890659,
           19890742-19890919,19891852-19891908,19892209-19892439
          Length = 500

 Score = 29.5 bits (63), Expect = 3.4
 Identities = 15/47 (31%), Positives = 21/47 (44%)
 Frame = -1

Query: 827 DDLFXGECHGQHSHKDNDRPTEHLETADVG*SQTNIHYGCSNQIQHS 687
           +DL  G     H++    +PTE   T + G  Q +      N IQHS
Sbjct: 356 EDLGGGATPSGHANVPKHQPTEVFNTTNAGVGQCSNSVAVDNNIQHS 402


>05_01_0180 +
           1268129-1268237,1268382-1268731,1268903-1269808,
           1270120-1271361
          Length = 868

 Score = 28.7 bits (61), Expect = 6.0
 Identities = 14/42 (33%), Positives = 21/42 (50%)
 Frame = -1

Query: 812 GECHGQHSHKDNDRPTEHLETADVG*SQTNIHYGCSNQIQHS 687
           G  H   S   N+ PT H++ +D G SQ +  YG  + +  S
Sbjct: 4   GNPHDFFSQSFNEAPTGHMDGSDYGFSQGSSGYGSRSTVPPS 45


>03_02_0394 -
           8081172-8081330,8082015-8082134,8082223-8082271,
           8083193-8083371,8083583-8083852,8084480-8084631,
           8085694-8085715,8086314-8086430
          Length = 355

 Score = 28.3 bits (60), Expect = 7.9
 Identities = 12/44 (27%), Positives = 19/44 (43%)
 Frame = -2

Query: 586 KHSISPKNIDKVCKNGWLKYLSSPSDPFDFNISAHFVLKELIEP 455
           KH ++      + K+ W    S+PS P      +H V   L+ P
Sbjct: 39  KHEVAKAEASSLKKSRWYMIKSNPSSPLTTQRESHKVSTHLVRP 82


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 20,438,623
Number of Sequences: 37544
Number of extensions: 405789
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 870
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2279943096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)