Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= fcaL-P05_F_C22
         (827 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    24   1.5  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     24   1.5  
AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.            24   1.5  
AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc fi...    23   2.6  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          23   3.4  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      23   3.4  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    23   4.6  
AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter...    22   8.0  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 605 VLQNTEHWGTFINSWNTKLQ 664
           V+  TE W +FIN W  KL+
Sbjct: 385 VVLETE-WSSFINPWTKKLE 403


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = +2

Query: 605 VLQNTEHWGTFINSWNTKLQ 664
           V+  TE W +FIN W  KL+
Sbjct: 91  VVLETE-WSSFINPWTKKLE 109


>AB022908-1|BAA86909.1|  493|Apis mellifera amylase protein.
          Length = 493

 Score = 24.2 bits (50), Expect = 1.5
 Identities = 7/15 (46%), Positives = 10/15 (66%)
 Frame = -2

Query: 577 ISPKNIDKVCKNGWL 533
           +SP   D +C NGW+
Sbjct: 365 LSPSIHDNICSNGWI 379


>AB208106-1|BAE72138.1|  111|Apis mellifera Broad complex zinc
          finger domain-Z1 isoform protein.
          Length = 111

 Score = 23.4 bits (48), Expect = 2.6
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 43 CNKLLTSKQQHRRH 2
          CNK+LTS  + RRH
Sbjct: 8  CNKILTSLTRLRRH 21


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 114 SSDMSWTITNIDYTLMITNILLLFVT 37
           ++DM  T  NIDY L+  N    ++T
Sbjct: 185 TADMKKTYNNIDYYLLAANYTGWYLT 210


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 23.0 bits (47), Expect = 3.4
 Identities = 10/26 (38%), Positives = 15/26 (57%)
 Frame = -3

Query: 114 SSDMSWTITNIDYTLMITNILLLFVT 37
           ++DM  T  NIDY L+  N    ++T
Sbjct: 185 TADMKKTYNNIDYYLLAANYTGWYLT 210


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 22.6 bits (46), Expect = 4.6
 Identities = 9/23 (39%), Positives = 14/23 (60%)
 Frame = +2

Query: 371 TLILLVTFIKQDGLDKLPEVPRP 439
           T +L +TF+  +    LP+VP P
Sbjct: 251 TTVLTMTFLGLEARTDLPKVPYP 273


>AY395073-1|AAQ96729.1|  203|Apis mellifera GABA neurotransmitter
           transporter-1A protein.
          Length = 203

 Score = 21.8 bits (44), Expect = 8.0
 Identities = 7/11 (63%), Positives = 8/11 (72%)
 Frame = +2

Query: 626 WGTFINSWNTK 658
           WG+  N WNTK
Sbjct: 98  WGSCNNYWNTK 108


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 232,761
Number of Sequences: 438
Number of extensions: 5098
Number of successful extensions: 18
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 18
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 26460186
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)