Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= fcaL-P05_F_C19
(828 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|ch... 33 0.037
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce... 32 0.086
SPCC162.08c |nup211||nuclear pore complex associated protein|Sch... 30 0.46
SPBPB21E7.04c ||SPAPB21E7.04c, SPAPB21E7.04c|S-adenosylmethionin... 28 1.9
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces... 27 2.5
SPAC7D4.11c |sec39||secretory pathway protein Sec39 |Schizosacch... 26 5.7
SPAC2G11.13 |atg22||autophagy associated protein Atg22 |Schizosa... 26 5.7
SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein Rad50|Schizos... 26 5.7
SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr 2||... 26 5.7
SPBC13G1.03c |pex14||peroxisomal membrane anchor protein|Schizos... 26 7.5
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc... 26 7.5
SPAC22A12.14c |||BSD domain protein, unknown biological role|Sch... 26 7.5
SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyce... 26 7.5
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 26 7.5
SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual 25 9.9
SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomy... 25 9.9
SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor ... 25 9.9
>SPAC27D7.02c |||GRIP domain protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 750
Score = 33.5 bits (73), Expect = 0.037
Identities = 15/60 (25%), Positives = 34/60 (56%), Gaps = 3/60 (5%)
Frame = +2
Query: 149 EYSTPASDPKNMQEVTQYV---QSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITD 319
EY+ PK ++E+T+ + +S L+ +KF+ S+ + +R+D + + +L+ I +
Sbjct: 335 EYTVDLETPKLVEELTKQLHVAESTLKENSEKFKQNSESLKSRVDNLNDYITKLQNEIDE 394
>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 210
Score = 32.3 bits (70), Expect = 0.086
Identities = 19/70 (27%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Frame = +2
Query: 116 NSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQ-DKFQSMSDQIINRIDEMGSRV 292
N + TE+ +T A+ + MQE + ++S +N+ +K + + D+I + +D G
Sbjct: 88 NMEQAAMTTESLKNTMAT-VQTMQETARQLKSQSKNVSIEKIEKLQDEIQDYMDAAGELN 146
Query: 293 DELEKNITDL 322
+ L +N+TD+
Sbjct: 147 EVLGQNMTDI 156
>SPCC162.08c |nup211||nuclear pore complex associated
protein|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1837
Score = 29.9 bits (64), Expect = 0.46
Identities = 20/87 (22%), Positives = 40/87 (45%)
Frame = +2
Query: 176 KNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDLMTQAGVENEK* 355
K +Q ++ LL+ Q F+ + + S+++ LEK ++ L +Q + NE+
Sbjct: 313 KELQNSNGELEKLLEAAQSSFEEQLESHKEAEASLKSQINFLEKEVSSLESQLKLANERL 372
Query: 356 K*FSSINLR*NIIPR*SVWINNKYK*F 436
+ + I + + S +NN K F
Sbjct: 373 RHYDEIEISDMSELKYSNLLNNSMKGF 399
>SPBPB21E7.04c ||SPAPB21E7.04c,
SPAPB21E7.04c|S-adenosylmethionine-dependent
methyltransferase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 281
Score = 27.9 bits (59), Expect = 1.9
Identities = 12/31 (38%), Positives = 19/31 (61%)
Frame = +2
Query: 185 QEVTQYVQSLLQNMQDKFQSMSDQIINRIDE 277
QE+ Y+ SL + D+ + D++IN IDE
Sbjct: 37 QELENYIFSLPREKLDQIRGKPDEVINVIDE 67
>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1727
Score = 27.5 bits (58), Expect = 2.5
Identities = 16/77 (20%), Positives = 38/77 (49%)
Frame = +2
Query: 119 SDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDE 298
S+ +V +S+ E+ + V++L +++ + Q++ QI N + E + + E
Sbjct: 528 SETLVNKELANFSSIKEAVSKTLELREKVRALECDVEIQKQTVQYQISNAVKENSNTLSE 587
Query: 299 LEKNITDLMTQAGVENE 349
KN+ + + ++NE
Sbjct: 588 QIKNLESELNSSKIKNE 604
Score = 26.6 bits (56), Expect = 4.3
Identities = 15/74 (20%), Positives = 34/74 (45%)
Frame = +2
Query: 131 VKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEKN 310
++ + ++ +S + +E+ +S L + QS ++ +++ +V +LEK
Sbjct: 173 IEERKKQHMFASSSSRVKEEILVQEKSALVSDLASLQSDHSKVCEKLEVSSRQVQDLEKK 232
Query: 311 ITDLMTQAGVENEK 352
+ L Q NEK
Sbjct: 233 LAGLAQQNTELNEK 246
>SPAC7D4.11c |sec39||secretory pathway protein Sec39
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 769
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/30 (40%), Positives = 15/30 (50%)
Frame = -3
Query: 421 IVDPDRLSWDDILTQIDR*KLFLLFIFNTS 332
I PD W D+ + I+R K LF N S
Sbjct: 384 IQSPDYKDWHDLYSYIERFKQLSLFFLNIS 413
>SPAC2G11.13 |atg22||autophagy associated protein Atg22
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 529
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/40 (30%), Positives = 22/40 (55%)
Frame = -1
Query: 201 YCVTSCIFFGSLAGVEYSFSVFLTILSEFGSAILKKIKYI 82
Y + SC+ GS++G+ S+S +L + IL + +I
Sbjct: 116 YILFSCVIIGSISGIILSWSPSSFLLGKIVFLILVDLNFI 155
>SPAC1556.01c |rad50|SPAP4C9.01c|DNA repair protein
Rad50|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1290
Score = 26.2 bits (55), Expect = 5.7
Identities = 12/37 (32%), Positives = 18/37 (48%)
Frame = +2
Query: 197 QYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVDELEK 307
+Y L + DK Q+ + NR+DE+ VD K
Sbjct: 483 EYESKNLLELLDKHQTALSSVENRLDEISEIVDSYHK 519
>SPBC8D2.14c |sed5||SNARE Sed5 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 309
Score = 26.2 bits (55), Expect = 5.7
Identities = 13/59 (22%), Positives = 28/59 (47%)
Frame = +2
Query: 116 NSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRV 292
+S+N+V + +N + + K++ E+ QN +KF + S N + G+ +
Sbjct: 119 HSENVVVSLQNSLANTSMTFKDILEIRTQNMKASQNRTEKFVASSSMNANPLINSGNSI 177
>SPBC13G1.03c |pex14||peroxisomal membrane anchor
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 286
Score = 25.8 bits (54), Expect = 7.5
Identities = 9/37 (24%), Positives = 24/37 (64%)
Frame = +2
Query: 212 LLQNMQDKFQSMSDQIINRIDEMGSRVDELEKNITDL 322
+L+N+ ++ + +S++ + DE+ +D+LE+ + L
Sbjct: 123 ILENLDEQTRKLSERTEKQQDELDIALDDLEETLNTL 159
>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1085
Score = 25.8 bits (54), Expect = 7.5
Identities = 16/72 (22%), Positives = 33/72 (45%)
Frame = +2
Query: 116 NSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQDKFQSMSDQIINRIDEMGSRVD 295
N D + + + + K+ +E QYV Q + + +++ Q++N E+ S
Sbjct: 476 NKDLLCQEQARKLEVLDLNVKSSREQLQYVSKSNQEHKKEVEALQLQLVNSSTELESVKS 535
Query: 296 ELEKNITDLMTQ 331
E EK +L+ +
Sbjct: 536 ENEKLKNELVLE 547
>SPAC22A12.14c |||BSD domain protein, unknown biological
role|Schizosaccharomyces pombe|chr 1|||Manual
Length = 347
Score = 25.8 bits (54), Expect = 7.5
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +2
Query: 80 GIYFIFFNMAEPNSDNIVKNTENEYSTPASDPKNMQEVTQYVQSLLQNMQ 229
G + +F+N + S+N + +T+ + S+ K+ E V S ++N++
Sbjct: 38 GKFGLFWNSMKEKSENFLDDTKGKASSGMQQLKSQLEENIPVNSAMENLR 87
>SPAC27E2.09 |mak2|phk1|histidine kinase Mak2 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2310
Score = 25.8 bits (54), Expect = 7.5
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Frame = +3
Query: 210 HFYKTCKINFKVCLIKS*IELMKWEAELMNWKRILQI--L*HKL 335
H+ I+ K+ I S + +++ +NWKR+ Q+ + HKL
Sbjct: 154 HYDLNAPIHAKLLTIGSSVSPIRFTLSSLNWKRLYQVQNICHKL 197
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.8 bits (54), Expect = 7.5
Identities = 10/20 (50%), Positives = 15/20 (75%)
Frame = +3
Query: 114 RTLTILLKTQKMNTQHQPAI 173
RT TI+ KT+ ++ HQPA+
Sbjct: 135 RTETIVKKTEHADSNHQPAV 154
>SPCC737.08 |||midasin |Schizosaccharomyces pombe|chr 3|||Manual
Length = 4717
Score = 25.4 bits (53), Expect = 9.9
Identities = 15/46 (32%), Positives = 27/46 (58%), Gaps = 1/46 (2%)
Frame = -3
Query: 334 SLCHKICNILFQFINSASHFINSI-YDLIRHTLKFILHVL*K*LYV 200
+L ++ L + ++ S+ + + YD+IRH LK + VL K +YV
Sbjct: 2315 NLLNQFSKFLIEIASANSNIVYKLSYDVIRHFLKLV--VLWKNIYV 2358
>SPBC24C6.02 |||ATP-dependent RNA helicase Spb4 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 606
Score = 25.4 bits (53), Expect = 9.9
Identities = 11/18 (61%), Positives = 13/18 (72%)
Frame = -1
Query: 183 IFFGSLAGVEYSFSVFLT 130
+FF S A VEY S+FLT
Sbjct: 261 VFFSSCASVEYFNSLFLT 278
>SPCC1442.01 |ste6|SPCC1450.17|guanyl-nucleotide exchange factor
Ste6|Schizosaccharomyces pombe|chr 3|||Manual
Length = 911
Score = 25.4 bits (53), Expect = 9.9
Identities = 14/31 (45%), Positives = 17/31 (54%), Gaps = 2/31 (6%)
Frame = -2
Query: 197 VSLPAYFLDRWLVLSIHFL--CF*QYCQSSV 111
VS P+YFL + IHFL F C +SV
Sbjct: 223 VSFPSYFLGSLIAHEIHFLPWDFNMLCSNSV 253
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,454,357
Number of Sequences: 5004
Number of extensions: 73864
Number of successful extensions: 256
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 245
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 406444570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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